Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 47 curated entries in PaperBLAST's database that match '4.3.1.17' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_4954: L-serine dehydratase (EC 4.3.1.17)
is similar to:
PaperBLAST

PfGW456L13_4954: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

100% id,
100% cov

Pf1N1B4_1013: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

95% id,
100% cov

AO353_15500: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

90% id,
100% cov

More...

PfGW456L13_1867: L-serine dehydratase (EC 4.3.1.17)
is similar to:
PaperBLAST

Pf6N2E2_5557: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

94% id,
100% cov

BPHYT_RS19340: L-serine ammonia-lyase (EC 4.3.1.17) from Burkholderia phytofirmans

68% id,
100% cov

RR42_RS20080: L-serine ammonia-lyase (EC 4.3.1.17) from Cupriavidus basilensis

68% id,
100% cov

More...

PfGW456L13_1089: L-serine dehydratase (EC 4.3.1.17)
is similar to:
PaperBLAST

AO353_15500: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

78% id,
100% cov

Pf1N1B4_1013: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

78% id,
100% cov

PfGW456L13_4954: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

77% id,
100% cov

More...

PfGW456L13_3031: Threonine dehydratase biosynthetic (EC 4.3.1.19)
is similar to:
PaperBLAST

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

40% id,
98% cov

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

40% id,
98% cov

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

40% id,
93% cov

More...

PfGW456L13_949: Threonine dehydratase biosynthetic (EC 4.3.1.19)
is similar to:
PaperBLAST

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

42% id,
93% cov

TD2_SOLLC / P25306: Threonine dehydratase 2 biosynthetic, chloroplastic; SlTD2; Threonine deaminase 2; EC 4.3.1.17; EC 4.3.1.19 from Solanum lycopersicum

45% id,
84% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

39% id,
94% cov

More...

PfGW456L13_443: D-cysteine desulfhydrase (EC 4.4.1.15)
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

40% id,
96% cov

PfGW456L13_3549: pyridoxal phosphate-dependent deaminase, putative
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

36% id,
98% cov

PfGW456L13_3185: Threonine dehydratase (EC 4.3.1.19)
is similar to:
PaperBLAST

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe

29% id,
97% cov

SDSL_MOUSE / Q8R238: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; SDH; EC 4.3.1.17; EC 4.3.1.19 from Mus musculus

29% id,
92% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens

35% id,
78% cov

More...

PfGW456L13_566: Tryptophan synthase beta chain (EC 4.2.1.20)
is similar to:
PaperBLAST

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

34% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory