Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)
Found 22 curated entries in PaperBLAST's database that match '4.3.1.18' as complete word(s).
These curated entries have 18 distinct sequences.
Running ublast with E ≤ 0.01
Found 7 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query
PfGW456L13_3648: D-serine dehydratase (EC 4.3.1.18) is similar to: | PaperBLAST |
PfGW456L13_3648: D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens | 100% id, 100% cov |
Q9HYN9: D-Serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas aeruginosa | 70% id, 100% cov |
AO353_25210: D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens | 69% id, 99% cov |
PfGW456L13_443: D-cysteine desulfhydrase (EC 4.4.1.15) is similar to: | PaperBLAST |
O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii | 40% id, 96% cov |
PfGW456L13_3549: pyridoxal phosphate-dependent deaminase, putative is similar to: | PaperBLAST |
O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii | 36% id, 98% cov |
PfGW456L13_949: Threonine dehydratase biosynthetic (EC 4.3.1.19) is similar to: | PaperBLAST |
SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana | 40% id, 87% cov |
SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe | 36% id, 94% cov |
SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus | 35% id, 94% cov |
PfGW456L13_3031: Threonine dehydratase biosynthetic (EC 4.3.1.19) is similar to: | PaperBLAST |
SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus | 37% id, 92% cov |
SRR_MOUSE / Q9QZX7: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus | 37% id, 91% cov |
SRR_HUMAN / Q9GZT4: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens | 37% id, 87% cov |
PfGW456L13_3185: Threonine dehydratase (EC 4.3.1.19) is similar to: | PaperBLAST |
SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe | 29% id, 97% cov |
Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum | 27% id, 99% cov |
SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa | 31% id, 83% cov |
PfGW456L13_4347: Serine phosphatase RsbU, regulator of sigma subunit is similar to: | PaperBLAST |
Q9HYN9: D-Serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas aeruginosa | 27% id, 27% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
3369404-3370498 (frame +2) on scaffold1/0|quiver|pilon is similar to: | PaperBLAST |
SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus | 35% id, 100% cov |
Lawrence Berkeley National Laboratory