Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 23 curated entries in PaperBLAST's database that match '4.3.1.3' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3)
is similar to:
PaperBLAST

PfGW456L13_320: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

100% id,
100% cov

Pf6N2E2_3799: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

95% id,
100% cov

HUTH_PSEPU / P21310: Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida
hutH / P21310: histidase subunit (EC 4.3.1.3) from Pseudomonas putida

84% id,
100% cov

More...

PfGW456L13_321: Histidine ammonia-lyase (EC 4.3.1.3)
is similar to:
PaperBLAST

Pf1N1B4_1582: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

91% id,
100% cov

AO356_09605: Histidine ammonia-lyase (EC 4.3.1.3) from Pseudomonas fluorescens

88% id,
100% cov

Ac3H11_2558: Histidine ammonia-lyase (EC 4.3.1.3) from Acidovorax sp.

40% id,
99% cov

More...

PfGW456L13_242: Putative histidine ammonia-lyase protein
is similar to:
PaperBLAST

BPHYT_RS07555: Histidine ammonia-lyase (EC 4.3.1.3) from Burkholderia phytofirmans

36% id,
91% cov

SM_b21165: Histidine ammonia-lyase (EC 4.3.1.3) from Sinorhizobium meliloti

34% id,
96% cov

Sama_1631: Histidine ammonia-lyase (EC 4.3.1.3) from Shewanella amazonensis

32% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory