Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 14 curated entries in PaperBLAST's database that match '5.1.1.4' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_3147: 4-hydroxyproline epimerase (EC 5.1.1.8)
is similar to:
PaperBLAST

Q9L4Q3: proline racemase (EC 5.1.1.4) from Acetoanaerobium sticklandii

39% id,
100% cov

PRAC_ACESD / E3PTZ4: Proline racemase; PR; AsProR; CsPR; EC 5.1.1.4 from Acetoanaerobium sticklandii

39% id,
99% cov

PRAC_CLODI / A8DEZ8: Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile
Q17ZY4: proline racemase (EC 5.1.1.4) from Clostridioides difficile
A8DEZ8: proline racemase (EC 5.1.1.4) from Clostridioides difficile

39% id,
99% cov

More...

PfGW456L13_2701: Cytochrome c2
is similar to:
PaperBLAST

Q4D480: proline racemase (EC 5.1.1.4) from Trypanosoma cruzi

41% id,
95% cov

PfGW456L13_3583: 4-hydroxyproline epimerase (EC 5.1.1.8)
is similar to:
PaperBLAST

PRAC_CLODI / A8DEZ8: Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile
Q17ZY4: proline racemase (EC 5.1.1.4) from Clostridioides difficile
A8DEZ8: proline racemase (EC 5.1.1.4) from Clostridioides difficile

37% id,
98% cov

PRCMB_TRYCC / Q868H8: Proline racemase B; TcPA45-B; TcPRACB; EC 5.1.1.4 from Trypanosoma cruzi
Q868H8: proline racemase (EC 5.1.1.4) from Trypanosoma cruzi

36% id,
98% cov

B8LFE4: proline racemase (EC 5.1.1.4) from Trypanosoma vivax

35% id,
96% cov

More...

PfGW456L13_3738: Cytochrome c2
is similar to:
PaperBLAST

Q4D480: proline racemase (EC 5.1.1.4) from Trypanosoma cruzi

38% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory