Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 13 curated entries in PaperBLAST's database that match '5.1.1.7' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_844: Diaminopimelate epimerase (EC 5.1.1.7)
is similar to:
PaperBLAST

DAPF_HAEIN / P44859: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Haemophilus influenzae

56% id,
100% cov

DAPF_ECOLI / P0A6K1: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Escherichia coli
DapF / b3809: diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli
dapF / P0A6K1: diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli

55% id,
100% cov

DAPF_BACAN / Q81XR2: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Bacillus anthracis

39% id,
95% cov

More...

PfGW456L13_2444: Diaminopimelate epimerase (EC 5.1.1.7)
is similar to:
PaperBLAST

E4NI20: diaminopimelate epimerase (EC 5.1.1.7) from Kitasatospora setae

32% id,
70% cov

DAPF_CORGL / Q8NP73: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Corynebacterium glutamicum
Q8NP73: diaminopimelate epimerase (EC 5.1.1.7) from Corynebacterium glutamicum

31% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory