Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 11 curated entries in PaperBLAST's database that match '5.1.99.1' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_3655: Bll2250 protein
is similar to:
PaperBLAST

Q8RCQ6: methylmalonyl-CoA epimerase (EC 5.1.99.1) from Caldanaerobacter subterraneus

25% id,
91% cov

GI:18042134 / Q8VQN0: methylmalonyl CoA epimerase subunit (EC 5.1.99.1) from Propionibacterium freudenreichii

28% id,
54% cov

PfGW456L13_1425: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
is similar to:
PaperBLAST

mcee / A9WGS0: methylmalonyl-CoA epimerase (EC 5.1.99.1) from Chloroflexus aurantiacus

31% id,
71% cov

EPI_CERS4 / Q3IZP4: Ethylmalonyl-CoA/methylmalonyl-CoA epimerase; EC 5.1.99.-; EC 5.1.99.1 from Cereibacter sphaeroides

28% id,
75% cov

PfGW456L13_3114: Lactoylglutathione lyase and related lyases
is similar to:
PaperBLAST

Q8RCQ6: methylmalonyl-CoA epimerase (EC 5.1.99.1) from Caldanaerobacter subterraneus

32% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory