Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 12 curated entries in PaperBLAST's database that match '5.4.3.2' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_4924: Lysine 2,3-aminomutase (EC 5.4.3.2)
is similar to:
PaperBLAST

G3F9W8: lysine 2,3-aminomutase (EC 5.4.3.2) from Methanocalculus chunghsingensis

27% id,
67% cov

KAMA_BACSU / O34676: L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Bacillus subtilis

26% id,
65% cov

KAMA_CLOSU / Q9XBQ8: L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Clostridium subterminale
kamA / Q9XBQ8: lysine 2,3-aminomutase (EC 5.4.3.2) from Clostridium subterminale
Q9XBQ8: lysine 2,3-aminomutase (EC 5.4.3.2) from Clostridium subterminale

27% id,
63% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory