Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 193 curated entries in PaperBLAST's database that match '6.2.1.1'.

These curated entries have 146 distinct sequences.

Running ublast with E ≤ 0.01

Found 23 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_1963: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
is similar to:
PaperBLAST

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

96% id,
100% cov

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

94% id,
100% cov

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

68% id,
99% cov

More...

PfGW456L13_1517: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
is similar to:
PaperBLAST

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

62% id,
100% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

61% id,
100% cov

ACSA_SALTY / Q8ZKF6: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Salmonella typhimurium

60% id,
96% cov

More...

PfGW456L13_2872: Acetoacetyl-CoA synthetase (EC 6.2.1.16)
is similar to:
PaperBLAST

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

56% id,
99% cov

AACS_MOUSE / Q9D2R0: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Mus musculus
Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

45% id,
98% cov

AACS_RAT / Q9JMI1: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rattus norvegicus

45% id,
98% cov

More...

PfGW456L13_2593: Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

55% id,
98% cov

F1CYZ6: 4-coumarate-CoA ligase (EC 6.2.1.12) from Acetobacterium woodii

32% id,
96% cov

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

29% id,
95% cov

More...

PfGW456L13_2980: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
is similar to:
PaperBLAST

ACSA_BACSU / P39062: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Bacillus subtilis

37% id,
94% cov

HBCL1_METS5 / A4YDT1: 4-hydroxybutyrate--CoA ligase 1; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

35% id,
89% cov

ACSM3_MOUSE / Q3UNX5: Acyl-coenzyme A synthetase ACSM3, mitochondrial; Acyl-CoA synthetase medium-chain family member 3; Butyrate--CoA ligase 3; Butyryl-coenzyme A synthetase 3; Middle-chain acyl-CoA synthetase 3; Propionate--CoA ligase; Protein SA homolog; EC 6.2.1.2; EC 6.2.1.17 from Mus musculus

36% id,
86% cov

More...

PfGW456L13_4159: Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

S27A2_RAT / P97524: Long-chain fatty acid transport protein 2; Arachidonate--CoA ligase; Fatty acid transport protein 2; FATP-2; Fatty-acid-coenzyme A ligase, very long-chain 1; Long-chain-fatty-acid--CoA ligase; Phytanate--CoA ligase; Solute carrier family 27 member 2; THCA-CoA ligase; Very long-chain acyl-CoA synthetase; VLACS; VLCS; Very long-chain-fatty-acid-CoA ligase; EC 6.2.1.15; EC 6.2.1.3; EC 6.2.1.24; EC 6.2.1.7; EC 6.2.1.- from Rattus norvegicus

39% id,
89% cov

S27A6_MOUSE / E9Q9W4: Long-chain fatty acid transport protein 6; FATP-6; Fatty acid transport protein 6; Arachidonate--CoA ligase; Fatty-acid-coenzyme A ligase, very long-chain 2; Long-chain-fatty-acid--CoA ligase; Solute carrier family 27 member 6; Very long-chain acyl-CoA synthetase homolog 1; VLACS2; VLCSH1; mVLCS-H1; EC 6.2.1.15; EC 6.2.1.3; EC 6.2.1.- from Mus musculus

40% id,
87% cov

S27A2_MOUSE / O35488: Long-chain fatty acid transport protein 2; Arachidonate--CoA ligase; Fatty acid transport protein 2; FATP-2; Fatty-acid-coenzyme A ligase, very long-chain 1; Long-chain-fatty-acid--CoA ligase; Phytanate--CoA ligase; Solute carrier family 27 member 2; Slc27a2; THCA-CoA ligase; Very long-chain acyl-CoA synthetase; VLACS; VLCS; Very long-chain-fatty-acid-CoA ligase; EC 6.2.1.15; EC 6.2.1.3; EC 6.2.1.24; EC 6.2.1.7; EC 6.2.1.- from Mus musculus

38% id,
90% cov

More...

PfGW456L13_3208: Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative
is similar to:
PaperBLAST

ACDB2_PYRFU / Q8TZY8: Acetate--CoA ligase [ADP-forming] II subunit beta; ADP-forming acetyl coenzyme A synthetase II subunit beta; ACS II subunit beta; EC 6.2.1.13 from Pyrococcus furiosus

37% id,
94% cov

Q5JIA9: acetate-CoA ligase (ADP-forming) (subunit 1/2) (EC 6.2.1.13) from Thermococcus kodakarensis

36% id,
96% cov

ACDB1_PYRFU / E7FHP1: Acetate--CoA ligase [ADP-forming] I subunit beta; ADP-forming acetyl coenzyme A synthetase I subunit beta; ACS I subunit beta; EC 6.2.1.13 from Pyrococcus furiosus
acdB / E7FHP1: acetate-CoA ligase β subunit (EC 6.2.1.13) from Pyrococcus furiosus

33% id,
95% cov

More...

PfGW456L13_2521: Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD3
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

34% id,
93% cov

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

32% id,
92% cov

CCL3_HUMLU / M4IS88: Acetate--CoA ligase CCL3; HlCCL3; 2-methylbutanoate--CoA ligase CCL4; 2-methylpropanoate--CoA ligase CCL4; Butanoate--CoA ligase CCL3; Hexanoate--CoA ligase CCL3; Isovalerate--CoA ligase CCL3; Pentanoate--CoA ligase CCL3; Propionate--CoA ligase CCL3; EC 6.2.1.1; EC 6.2.1.-; EC 6.2.1.17 from Humulus lupulus

30% id,
95% cov

More...

PfGW456L13_4890: Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-)
is similar to:
PaperBLAST

HBCL2_METS5 / A4YDR9: 4-hydroxybutyrate--CoA ligase 2; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; acyl-activating enzyme; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

32% id,
97% cov

AEE7_ARATH / Q8VZF1: Acetate/butyrate--CoA ligase AAE7, peroxisomal; AMP-binding protein 7; AtAMPBP7; Acetyl-CoA synthetase; Acyl-activating enzyme 7; Butyryl-CoA synthetase; Protein ACETATE NON-UTILIZING 1; EC 6.2.1.1; EC 6.2.1.2 from Arabidopsis thaliana

33% id,
92% cov

CCL3_HUMLU / M4IS88: Acetate--CoA ligase CCL3; HlCCL3; 2-methylbutanoate--CoA ligase CCL4; 2-methylpropanoate--CoA ligase CCL4; Butanoate--CoA ligase CCL3; Hexanoate--CoA ligase CCL3; Isovalerate--CoA ligase CCL3; Pentanoate--CoA ligase CCL3; Propionate--CoA ligase CCL3; EC 6.2.1.1; EC 6.2.1.-; EC 6.2.1.17 from Humulus lupulus

32% id,
92% cov

More...

PfGW456L13_1911: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

4CLL1_ARATH / Q9LQ12: 4-coumarate--CoA ligase-like 1; 4-coumarate--CoA ligase isoform 10; At4CL10; EC 6.2.1.12 from Arabidopsis thaliana

31% id,
96% cov

U3MJP5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pueraria montana

30% id,
97% cov

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

31% id,
92% cov

More...

PfGW456L13_4265: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

33% id,
88% cov

PfGW456L13_1910: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

32% id,
89% cov

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

30% id,
93% cov

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

28% id,
96% cov

More...

PfGW456L13_1619: Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-)
is similar to:
PaperBLAST

CNL_PETHY / I3PB36: Trans-cinnamate:CoA ligase, peroxisomal; Cinnamic acid:CoA ligase; Ph-CNL; PhCNL; (E)-caffeate:CoA ligase CNL; 4-coumarate:CoA ligase CNL; Protein ACYL-ACTIVATING ENZYME; PhAAE; EC 6.2.1.-; EC 6.2.1.12 from Petunia hybrida
CNL / I3PB36: cinnamate:CoA ligase (EC 6.2.1.12) from Petunia hybrida

30% id,
95% cov

HBCL2_METS5 / A4YDR9: 4-hydroxybutyrate--CoA ligase 2; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; acyl-activating enzyme; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

30% id,
94% cov

CCL3_HUMLU / M4IS88: Acetate--CoA ligase CCL3; HlCCL3; 2-methylbutanoate--CoA ligase CCL4; 2-methylpropanoate--CoA ligase CCL4; Butanoate--CoA ligase CCL3; Hexanoate--CoA ligase CCL3; Isovalerate--CoA ligase CCL3; Pentanoate--CoA ligase CCL3; Propionate--CoA ligase CCL3; EC 6.2.1.1; EC 6.2.1.-; EC 6.2.1.17 from Humulus lupulus

29% id,
96% cov

More...

PfGW456L13_4266: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
is similar to:
PaperBLAST

ccsA / Q75VW8: citryl-CoA synthetase large subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW8: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

32% id,
88% cov

PfGW456L13_3400: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

P41636: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus taeda

29% id,
87% cov

4CL5_ORYSJ / Q6ZAC1: 4-coumarate--CoA ligase 5; 4CL 5; Os4CL5; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 5; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q6ZAC1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

29% id,
87% cov

B8QN50: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus radiata

28% id,
87% cov

More...

PfGW456L13_2294: Pyoverdine chromophore precursor synthetase PvdL
is similar to:
PaperBLAST

B7SBA1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Physcomitrium patens

27% id,
92% cov

A0A1L7H9K1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

27% id,
90% cov

4CL4_ORYSJ / Q67W82: 4-coumarate--CoA ligase 4; 4CL 4; Os4CL4; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 4; Protein RESISTANCE TO ALUMINUM 1; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q67W82: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

24% id,
98% cov

More...

PfGW456L13_2900: Pyoverdine chromophore precursor synthetase PvdL @ Siderophore biosynthesis non-ribosomal peptide synthetase modules
is similar to:
PaperBLAST

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

27% id,
90% cov

B7SB99: 4-coumarate-CoA ligase (EC 6.2.1.12) from Physcomitrium patens

24% id,
99% cov

4CLL6_ARATH / Q84P24: 4-coumarate--CoA ligase-like 6; 4-coumarate--CoA ligase; 4-coumarate--CoA ligase isoform 7; At4CL7; 4-hydroxybenzoate--CoA ligase; EC 6.2.1.-; EC 6.2.1.12; EC 6.2.1.27 from Arabidopsis thaliana

25% id,
94% cov

More...

PfGW456L13_2049: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

ACSL5_RAT / O88813: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

30% id,
80% cov

ACSL5_HUMAN / Q9ULC5: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens

28% id,
84% cov

CCL1_HUMLU / M4ISH0: 4-coumarate--CoA ligase CCL1; HlCCL1; EC 6.2.1.12 from Humulus lupulus

25% id,
90% cov

More...

PfGW456L13_2374: Non-ribosomal peptide synthetase modules, pyoverdine
is similar to:
PaperBLAST

B7SB99: 4-coumarate-CoA ligase (EC 6.2.1.12) from Physcomitrium patens

25% id,
97% cov

B7SB99: 4-coumarate-CoA ligase (EC 6.2.1.12) from Physcomitrium patens

24% id,
97% cov

D5LNB5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

26% id,
90% cov

More...

PfGW456L13_2376: Peptide synthetase
is similar to:
PaperBLAST

B7SB99: 4-coumarate-CoA ligase (EC 6.2.1.12) from Physcomitrium patens

24% id,
97% cov

4CL5_ORYSJ / Q6ZAC1: 4-coumarate--CoA ligase 5; 4CL 5; Os4CL5; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 5; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q6ZAC1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

25% id,
90% cov

D5LNB5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

24% id,
89% cov

More...

PfGW456L13_2377: Non-ribosomal peptide synthetase modules, pyoverdine??
is similar to:
PaperBLAST

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

25% id,
94% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

24% id,
96% cov

4CLL1_ARATH / Q9LQ12: 4-coumarate--CoA ligase-like 1; 4-coumarate--CoA ligase isoform 10; At4CL10; EC 6.2.1.12 from Arabidopsis thaliana

24% id,
89% cov

More...

PfGW456L13_551: Non-ribosomal peptide synthetase modules and related proteins
is similar to:
PaperBLAST

PPSA_ASPOR / Q2UB01: Acyl-CoA ligase ppsA; 2,4'-dihydroxy-3'-methoxypropiophenone biosynthesis cluster protein A; EC 6.2.1.13; EC 6.2.1.17 from Aspergillus oryzae

25% id,
73% cov

4CLL6_ARATH / Q84P24: 4-coumarate--CoA ligase-like 6; 4-coumarate--CoA ligase; 4-coumarate--CoA ligase isoform 7; At4CL7; 4-hydroxybenzoate--CoA ligase; EC 6.2.1.-; EC 6.2.1.12; EC 6.2.1.27 from Arabidopsis thaliana

27% id,
66% cov

4CLL3_ARATH / Q3E6Y4: 4-coumarate--CoA ligase-like 3; EC 6.2.1.12 from Arabidopsis thaliana

25% id,
73% cov

More...

PfGW456L13_3173: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

ACBG2_HUMAN / Q5FVE4: Long-chain-fatty-acid--CoA ligase ACSBG2; Acyl-CoA synthetase bubblegum family member 2; Arachidonate--CoA ligase ACSBG2; Bubblegum-related protein; PRTD-NY3; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens

27% id,
27% cov

ACBG2_MOUSE / Q2XU92: Long-chain-fatty-acid--CoA ligase ACSBG2; Acyl-CoA synthetase bubblegum family member 2; Arachidonate--CoA ligase ACSBG2; Bubblegum-related protein; EC 6.2.1.3; EC 6.2.1.15 from Mus musculus

27% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 23 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4777491-4778459 (frame -3) on scaffold1/0|quiver|pilon
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus
Also see hits to annotated proteins above

33% id,
90% cov

3816969-3818618 (frame +3) on scaffold1/0|quiver|pilon
is similar to:
PaperBLAST

4CL5_ORYSJ / Q6ZAC1: 4-coumarate--CoA ligase 5; 4CL 5; Os4CL5; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 5; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q6ZAC1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa
Also see hits to annotated proteins above

29% id,
94% cov

4CL1_ORYSJ / P17814: 4-coumarate--CoA ligase 1; 4CL 1; Os4CL1; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 1; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
P17814: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa
Also see hits to annotated proteins above

29% id,
91% cov

S27A4_MOUSE / Q91VE0: Long-chain fatty acid transport protein 4; FATP-4; Fatty acid transport protein 4; Arachidonate--CoA ligase; Long-chain-fatty-acid--CoA ligase; Solute carrier family 27 member 4; Very long-chain acyl-CoA synthetase 4; ACSVL4; EC 6.2.1.15; EC 6.2.1.3; EC 6.2.1.- from Mus musculus
Also see hits to annotated proteins above

28% id,
83% cov

More...

2622067-2633880 (frame +1) on scaffold1/0|quiver|pilon
is similar to:
PaperBLAST

CCL1_HUMLU / M4ISH0: 4-coumarate--CoA ligase CCL1; HlCCL1; EC 6.2.1.12 from Humulus lupulus
Also see hits to annotated proteins above

25% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory