Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 11 curated entries in PaperBLAST's database that match '6.2.1.16' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 17 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_2872: Acetoacetyl-CoA synthetase (EC 6.2.1.16)
is similar to:
PaperBLAST

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

56% id,
99% cov

AACS_MOUSE / Q9D2R0: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Mus musculus
Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

45% id,
98% cov

AACS_RAT / Q9JMI1: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rattus norvegicus

45% id,
98% cov

More...

PfGW456L13_2593: Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

55% id,
98% cov

PfGW456L13_2521: Long-chain fatty-acid-CoA ligase (EC 6.2.1.3), Mycobacterial subgroup FadD3
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

34% id,
93% cov

PfGW456L13_1910: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

32% id,
89% cov

PfGW456L13_1911: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

31% id,
89% cov

PfGW456L13_4890: Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

27% id,
97% cov

PfGW456L13_1963: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
is similar to:
PaperBLAST

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

28% id,
90% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

27% id,
92% cov

AACS_MOUSE / Q9D2R0: Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Mus musculus
Q9D2R0: acetoacetate-CoA ligase (EC 6.2.1.16) from Mus musculus

25% id,
90% cov

More...

PfGW456L13_1619: Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

26% id,
95% cov

PfGW456L13_1517: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
is similar to:
PaperBLAST

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

27% id,
93% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

27% id,
92% cov

AACS_HUMAN / Q86V21: Acetoacetyl-CoA synthetase; Acyl-CoA synthetase family member 1; Protein sur-5 homolog; EC 6.2.1.16 from Homo sapiens
Q86V21: acetoacetate-CoA ligase (EC 6.2.1.16) from Homo sapiens

24% id,
92% cov

More...

PfGW456L13_2377: Non-ribosomal peptide synthetase modules, pyoverdine??
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

24% id,
96% cov

PfGW456L13_2980: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

26% id,
89% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

26% id,
79% cov

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

24% id,
80% cov

More...

PfGW456L13_2374: Non-ribosomal peptide synthetase modules, pyoverdine
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

23% id,
97% cov

PfGW456L13_2294: Pyoverdine chromophore precursor synthetase PvdL
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

26% id,
64% cov

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

26% id,
26% cov

PfGW456L13_2900: Pyoverdine chromophore precursor synthetase PvdL @ Siderophore biosynthesis non-ribosomal peptide synthetase modules
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

21% id,
67% cov

PfGW456L13_4159: Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

25% id,
52% cov

PfGW456L13_2049: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

28% id,
35% cov

PfGW456L13_2376: Peptide synthetase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

28% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 17 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory