Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 9 curated entries in PaperBLAST's database that match '6.3.2.43' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_4749: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
is similar to:
PaperBLAST

A5U2Z7: [lysine-biosynthesis-protein LysW]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis
P9WFU7: [lysine-biosynthesis-protein LysW]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis

39% id,
45% cov

PfGW456L13_5099: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
is similar to:
PaperBLAST

LYSX_SULAC / Q4JAP9: Alpha-aminoadipate--LysW ligase LysX; AAA--LysW ligase LysX; EC 6.3.2.43 from Sulfolobus acidocaldarius
Q4JAP9: [lysine-biosynthesis-protein LysW]-L-2-aminoadipate ligase (EC 6.3.2.43) from Sulfolobus acidocaldarius

23% id,
61% cov

LYSX_THET8 / Q5SH23: Alpha-aminoadipate--LysW ligase LysX; AAA--LysW ligase LysX; EC 6.3.2.43 from Thermus thermophilus
lysX / Q5SH23: L-2-aminoadipate--LysW ligase monomer (EC 6.3.2.43) from Thermus thermophilus
Q5SH23: [lysine-biosynthesis-protein LysW]-L-2-aminoadipate ligase (EC 6.3.2.43) from Thermus thermophilus

29% id,
44% cov

PfGW456L13_4650: membrane protein, putative
is similar to:
PaperBLAST

A5U2Z7: [lysine-biosynthesis-protein LysW]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis
P9WFU7: [lysine-biosynthesis-protein LysW]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis

28% id,
30% cov

PfGW456L13_1849: Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23)
is similar to:
PaperBLAST

A5U2Z7: [lysine-biosynthesis-protein LysW]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis
P9WFU7: [lysine-biosynthesis-protein LysW]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis

28% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory