Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 1 curated entries in PaperBLAST's database that match '[LysW]-aminoadipate semialdehyde transaminase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_4910: Acetylornithine aminotransferase (EC 2.6.1.11)
is similar to:
PaperBLAST

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

38% id,
98% cov

PfGW456L13_1971: Succinylornithine transaminase (EC 2.6.1.81)
is similar to:
PaperBLAST

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

42% id,
89% cov

PfGW456L13_2301: Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76)
is similar to:
PaperBLAST

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

39% id,
93% cov

PfGW456L13_4982: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
is similar to:
PaperBLAST

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

36% id,
96% cov

PfGW456L13_1158: Acetylornithine aminotransferase (EC 2.6.1.11)
is similar to:
PaperBLAST

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

33% id,
92% cov

PfGW456L13_398: 4-aminobutyrate aminotransferase (EC 2.6.1.19)
is similar to:
PaperBLAST

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

30% id,
92% cov

PfGW456L13_1044: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
is similar to:
PaperBLAST

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

31% id,
91% cov

PfGW456L13_3745: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
is similar to:
PaperBLAST

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

30% id,
94% cov

PfGW456L13_927: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
is similar to:
PaperBLAST

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

29% id,
94% cov

PfGW456L13_2414: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
is similar to:
PaperBLAST

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

27% id,
99% cov

PfGW456L13_3: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
is similar to:
PaperBLAST

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

27% id,
94% cov

PfGW456L13_1383: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)
is similar to:
PaperBLAST

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

34% id,
70% cov

PfGW456L13_494: 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
is similar to:
PaperBLAST

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

35% id,
56% cov

LYSJ_THET2 / Q93R93: [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus

35% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory