Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 1 curated entries in PaperBLAST's database that match '2-deoxy-3-keto-D-ribonoate cleavage enzyme' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_1095: FIG004891: hypothetical protein in carnitine cluster
is similar to:
PaperBLAST

PS417_07250: 2-deoxy-3-keto-D-ribonoate cleavage enzyme from Pseudomonas simiae

36% id,
97% cov

PS417_07250: 2-deoxy-3-keto-D-ribonoate cleavage enzyme from Pseudomonas simiae

42% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory