Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 4 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase%LeuD' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_3947: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
is similar to:
PaperBLAST

LeuD / b0071: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli
leuD / P30126: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli

65% id,
98% cov

DVU2983: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

30% id,
75% cov

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud)from methhanocaldococcus jannaschii dsm2661 (mj1271)

32% id,
68% cov

PfGW456L13_3593: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
is similar to:
PaperBLAST

LeuD / b0071: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli
leuD / P30126: 3-isopropylmalate dehydratase subunit LeuD (EC 4.2.1.33) from Escherichia coli

42% id,
95% cov

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud)from methhanocaldococcus jannaschii dsm2661 (mj1271)

30% id,
93% cov

DVU2983: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

27% id,
98% cov

PfGW456L13_4052: Aconitate hydratase (EC 4.2.1.3)
is similar to:
PaperBLAST

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud)from methhanocaldococcus jannaschii dsm2661 (mj1271)

29% id,
66% cov

DVU2983: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

26% id,
65% cov

PfGW456L13_4116: 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
is similar to:
PaperBLAST

2pkpA / Q58667: Crystal structure of 3-isopropylmalate dehydratase (leud)from methhanocaldococcus jannaschii dsm2661 (mj1271)

27% id,
69% cov

DVU2983: 3-isopropylmalate dehydratase / (R)-citramalate isomerase, small subunit LeuD (EC 4.2.1.33; EC 4.2.1.35) from Desulfovibrio vulgaris

35% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory