Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 6 curated entries in PaperBLAST's database that match 'D-alanine%dehydrogenase' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_812: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
is similar to:
PaperBLAST

Psest_3793: D-alanine dehydrogenase (EC 1.4.99.-) from Pseudomonas stutzeri

85% id,
100% cov

DADA1_PSEAE / Q9HTQ0: D-amino acid dehydrogenase 1; D-alanine dehydrogenase 1; EC 1.4.99.- from Pseudomonas aeruginosa

84% id,
100% cov

DADA_ECOLI / P0A6J5: D-amino acid dehydrogenase; D-alanine dehydrogenase; EC 1.4.99.- from Escherichia coli

63% id,
97% cov

More...

PfGW456L13_1040: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
is similar to:
PaperBLAST

DADA1_PSEAE / Q9HTQ0: D-amino acid dehydrogenase 1; D-alanine dehydrogenase 1; EC 1.4.99.- from Pseudomonas aeruginosa

40% id,
95% cov

Psest_3793: D-alanine dehydrogenase (EC 1.4.99.-) from Pseudomonas stutzeri

40% id,
95% cov

DADA_KLEAE / O30745: D-amino acid dehydrogenase; D-alanine dehydrogenase; EC 1.4.99.- from Klebsiella aerogenes

39% id,
94% cov

More...

PfGW456L13_3586: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
is similar to:
PaperBLAST

AZOBR_RS08020: D-alanine dehydrogenase (EC 1.4.99.-) from Azospirillum brasilense

28% id,
91% cov

PfGW456L13_1488: Glycine oxidase ThiO (EC 1.4.3.19)
is similar to:
PaperBLAST

AZOBR_RS08020: D-alanine dehydrogenase (EC 1.4.99.-) from Azospirillum brasilense

29% id,
69% cov

PfGW456L13_964: FIG00350678: hypothetical protein
is similar to:
PaperBLAST

AZOBR_RS08020: D-alanine dehydrogenase (EC 1.4.99.-) from Azospirillum brasilense

40% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory