Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 21 curated entries in PaperBLAST's database that match 'Glycine cleavage system H' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_903: Glycine cleavage system H protein is similar to:	PaperBLAST
GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli Gcv / b2904: glycine cleavage system H protein from Escherichia coli gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli	60% id, 99% cov
GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus	57% id, 96% cov
GCSH_BACSU / O32174: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Bacillus subtilis	47% id, 98% cov
gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.	48% id, 93% cov
GCSH_STAAM / P64213: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Staphylococcus aureus	45% id, 98% cov
GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii	54% id, 71% cov
GCSH_ORYSJ / A3C6G9: Glycine cleavage system H protein, mitochondrial from Oryza sativa	50% id, 74% cov
GCSH3_ARATH / Q9LQL0: Glycine cleavage system H protein 3, mitochondrial from Arabidopsis thaliana	50% id, 73% cov
GCSH1_ARATH / P25855: Glycine cleavage system H protein 1, mitochondrial from Arabidopsis thaliana GDH1 / P25855: glycine cleavage system H protein 1 (EC 1.4.1.27) from Arabidopsis thaliana	48% id, 73% cov
GCSH_FLATR / P46485: Glycine cleavage system H protein, mitochondrial; Lipoyl-bearing H protein from Flaveria trinervia	49% id, 69% cov
GCSH_HUMAN / P23434: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Homo sapiens GCSH / P23434: glycine cleavage system H protein, mitochondrial (EC 1.4.1.27) from Homo sapiens	47% id, 68% cov
GCSH_CHICK / P11183: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Gallus gallus	43% id, 71% cov
GCSH_SCHPO / Q9HDV9: Putative glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Schizosaccharomyces pombe	46% id, 67% cov
GCSH_BOVIN / P20821: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Bos taurus	45% id, 68% cov
GCSH_YEAST / P39726: Glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Saccharomyces cerevisiae	40% id, 68% cov
GCVHL_STRPG / P0DN69: Glycine cleavage system H-like protein; GcvH-L from Streptococcus pyogenes	28% id, 90% cov
More...

PfGW456L13_1869: Glycine cleavage system H protein is similar to:	PaperBLAST
GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus	52% id, 94% cov
GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli Gcv / b2904: glycine cleavage system H protein from Escherichia coli gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli	51% id, 96% cov
GCSH_BACSU / O32174: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Bacillus subtilis	43% id, 95% cov
GCSH_STAAM / P64213: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Staphylococcus aureus	43% id, 95% cov
gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.	40% id, 87% cov
GCSH_CHICK / P11183: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Gallus gallus	44% id, 75% cov
GCSH_HUMAN / P23434: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Homo sapiens GCSH / P23434: glycine cleavage system H protein, mitochondrial (EC 1.4.1.27) from Homo sapiens	46% id, 73% cov
GCSH_BOVIN / P20821: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Bos taurus	46% id, 73% cov
GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii	46% id, 72% cov
GCSH1_ARATH / P25855: Glycine cleavage system H protein 1, mitochondrial from Arabidopsis thaliana GDH1 / P25855: glycine cleavage system H protein 1 (EC 1.4.1.27) from Arabidopsis thaliana	42% id, 77% cov
GCSH3_ARATH / Q9LQL0: Glycine cleavage system H protein 3, mitochondrial from Arabidopsis thaliana	42% id, 77% cov
GCSH_ORYSJ / A3C6G9: Glycine cleavage system H protein, mitochondrial from Oryza sativa	43% id, 73% cov
GCSH_FLATR / P46485: Glycine cleavage system H protein, mitochondrial; Lipoyl-bearing H protein from Flaveria trinervia	40% id, 77% cov
GCSH_SCHPO / Q9HDV9: Putative glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Schizosaccharomyces pombe	42% id, 73% cov
GCSH_YEAST / P39726: Glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Saccharomyces cerevisiae	39% id, 72% cov
More...

PfGW456L13_2686: Glycine cleavage system H protein is similar to:	PaperBLAST
GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus	52% id, 94% cov
GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli Gcv / b2904: glycine cleavage system H protein from Escherichia coli gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli	50% id, 96% cov
GCSH_BACSU / O32174: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Bacillus subtilis	40% id, 96% cov
GCSH_STAAM / P64213: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Staphylococcus aureus	39% id, 97% cov
gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.	39% id, 95% cov
GCSH_CHICK / P11183: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Gallus gallus	46% id, 73% cov
GCSH_ORYSJ / A3C6G9: Glycine cleavage system H protein, mitochondrial from Oryza sativa	41% id, 77% cov
GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii	42% id, 75% cov
GCSH_YEAST / P39726: Glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Saccharomyces cerevisiae	43% id, 74% cov
GCSH_HUMAN / P23434: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Homo sapiens GCSH / P23434: glycine cleavage system H protein, mitochondrial (EC 1.4.1.27) from Homo sapiens	45% id, 69% cov
GCSH_BOVIN / P20821: Glycine cleavage system H protein, mitochondrial; Lipoic acid-containing protein from Bos taurus	45% id, 69% cov
GCSH_FLATR / P46485: Glycine cleavage system H protein, mitochondrial; Lipoyl-bearing H protein from Flaveria trinervia	38% id, 77% cov
GCSH3_ARATH / Q9LQL0: Glycine cleavage system H protein 3, mitochondrial from Arabidopsis thaliana	38% id, 76% cov
GCSH1_ARATH / P25855: Glycine cleavage system H protein 1, mitochondrial from Arabidopsis thaliana GDH1 / P25855: glycine cleavage system H protein 1 (EC 1.4.1.27) from Arabidopsis thaliana	37% id, 76% cov
GCSH_SCHPO / Q9HDV9: Putative glycine cleavage system H protein, mitochondrial; Glycine decarboxylase complex subunit H from Schizosaccharomyces pombe	38% id, 74% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory