Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 1 curated entries in PaperBLAST's database that match 'LysW%lysine%hydrolase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_912: Acetylornithine deacetylase (EC 3.5.1.16)
is similar to:
PaperBLAST

LYSK_THET2 / Q8VUS5: [LysW]-lysine hydrolase; EC 3.5.1.130 from Thermus thermophilus

27% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory