Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 22 curated entries in PaperBLAST's database that match 'argininosuccinate lyase' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_854: Argininosuccinate lyase (EC 4.3.2.1)
is similar to:
PaperBLAST

argH / BAC65282.1: argininosuccinate lyase from Burkholderia multivorans

64% id,
99% cov

2e9fB / Q5SLL0: Crystal structure of t.Th.Hb8 argininosuccinate lyase complexed with l-arginine

53% id,
97% cov

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

50% id,
99% cov

More...

PfGW456L13_4586: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)
is similar to:
PaperBLAST

6ienB / P9WPY7: Substrate/product bound argininosuccinate lyase from mycobacterium tuberculosis

24% id,
85% cov

P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis

24% id,
82% cov

argH / CAA88927.2: argininosuccinate lyase from Streptomyces clavuligerus

28% id,
61% cov

PfGW456L13_2160: Fumarate hydratase class II (EC 4.2.1.2)
is similar to:
PaperBLAST

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

22% id,
78% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory