Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 5 curated entries in PaperBLAST's database that match '1.1.1.173' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 25 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_451: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

38% id,
99% cov

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

33% id,
99% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

33% id,
98% cov

More...

Pf1N1B4_4527: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

38% id,
98% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

36% id,
97% cov

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

34% id,
98% cov

More...

Pf1N1B4_4943: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

38% id,
96% cov

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

38% id,
97% cov

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

35% id,
97% cov

More...

Pf1N1B4_3809: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

37% id,
97% cov

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

36% id,
97% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

33% id,
97% cov

Pf1N1B4_4671: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

37% id,
96% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

32% id,
95% cov

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

32% id,
96% cov

Pf1N1B4_5039: Multiple polyol-specific dehydrogenase (EC 1.1.1.-)
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

36% id,
99% cov

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

34% id,
98% cov

RM1DH_PICST / A3LZU7: L-rhamnose-1-dehydrogenase; EC 1.1.1.173 from Scheffersomyces stipitis
LRA1 / A3LZU7: NAD+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.173) from Scheffersomyces stipitis

32% id,
98% cov

Pf1N1B4_1687: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

37% id,
96% cov

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

36% id,
97% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

33% id,
98% cov

More...

Pf1N1B4_1519: 3-oxoacyl-[ACP] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

35% id,
97% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

35% id,
96% cov

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

34% id,
95% cov

More...

Pf1N1B4_1031: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

35% id,
96% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

34% id,
96% cov

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

32% id,
97% cov

More...

Pf1N1B4_412: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

RM1DH_PICST / A3LZU7: L-rhamnose-1-dehydrogenase; EC 1.1.1.173 from Scheffersomyces stipitis
LRA1 / A3LZU7: NAD+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.173) from Scheffersomyces stipitis

35% id,
97% cov

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

33% id,
98% cov

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

33% id,
98% cov

More...

Pf1N1B4_1650: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

34% id,
96% cov

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

33% id,
96% cov

RM1DH_PICST / A3LZU7: L-rhamnose-1-dehydrogenase; EC 1.1.1.173 from Scheffersomyces stipitis
LRA1 / A3LZU7: NAD+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.173) from Scheffersomyces stipitis

31% id,
95% cov

More...

Pf1N1B4_4153: Glucose 1-dehydrogenase (EC 1.1.1.47)
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

33% id,
97% cov

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

31% id,
98% cov

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

30% id,
98% cov

Pf1N1B4_512: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

32% id,
98% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

32% id,
97% cov

RM1DH_PICST / A3LZU7: L-rhamnose-1-dehydrogenase; EC 1.1.1.173 from Scheffersomyces stipitis
LRA1 / A3LZU7: NAD+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.173) from Scheffersomyces stipitis

28% id,
98% cov

Pf1N1B4_1271: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

32% id,
96% cov

RM1DH_PICST / A3LZU7: L-rhamnose-1-dehydrogenase; EC 1.1.1.173 from Scheffersomyces stipitis
LRA1 / A3LZU7: NAD+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.173) from Scheffersomyces stipitis

29% id,
96% cov

Pf1N1B4_4954: Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10)
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

31% id,
98% cov

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

30% id,
97% cov

RM1DH_PICST / A3LZU7: L-rhamnose-1-dehydrogenase; EC 1.1.1.173 from Scheffersomyces stipitis
LRA1 / A3LZU7: NAD+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.173) from Scheffersomyces stipitis

30% id,
96% cov

More...

Pf1N1B4_5797: 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

31% id,
96% cov

Pf1N1B4_5633: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

31% id,
98% cov

RM1DH_PICST / A3LZU7: L-rhamnose-1-dehydrogenase; EC 1.1.1.173 from Scheffersomyces stipitis
LRA1 / A3LZU7: NAD+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.173) from Scheffersomyces stipitis

27% id,
98% cov

Pf1N1B4_2449: Probable short-chain dehydrogenase
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

31% id,
97% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

29% id,
96% cov

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

27% id,
97% cov

More...

Pf1N1B4_4155: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

35% id,
83% cov

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

32% id,
86% cov

Pf1N1B4_4873: clavaldehyde dehydrogenase
is similar to:
PaperBLAST

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

29% id,
96% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

30% id,
90% cov

RM1DH_PICST / A3LZU7: L-rhamnose-1-dehydrogenase; EC 1.1.1.173 from Scheffersomyces stipitis
LRA1 / A3LZU7: NAD+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.173) from Scheffersomyces stipitis

26% id,
91% cov

Pf1N1B4_321: Probable short-chain dehydrogenase
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

29% id,
93% cov

RM1DH_PICST / A3LZU7: L-rhamnose-1-dehydrogenase; EC 1.1.1.173 from Scheffersomyces stipitis
LRA1 / A3LZU7: NAD+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.173) from Scheffersomyces stipitis

27% id,
74% cov

Pf1N1B4_4872: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

RM1DH_PICST / A3LZU7: L-rhamnose-1-dehydrogenase; EC 1.1.1.173 from Scheffersomyces stipitis
LRA1 / A3LZU7: NAD+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.173) from Scheffersomyces stipitis

29% id,
86% cov

Pf1N1B4_2555: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

24% id,
92% cov

Pf1N1B4_358: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

29% id,
77% cov

Pf1N1B4_4554: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

BPHYT_RS28235: L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) from Burkholderia phytofirmans

30% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 23 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory