Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 13 curated entries in PaperBLAST's database that match '1.1.1.203' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_4511: UDP-glucose 4-epimerase (EC 5.1.3.2)
is similar to:
PaperBLAST

Pf1N1B4_4511: D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas fluorescens

100% id,
100% cov

PS417_17360: D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas simiae

87% id,
98% cov

URODH_PSESM / Q888H1: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas syringae
udh / Q888H1: uronic acid dehydrogenase subunit (EC 1.1.1.203) from Pseudomonas syringae
Q888H1: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas syringae

87% id,
98% cov

More...

Pf1N1B4_2638: UDP-glucose 4-epimerase (EC 5.1.3.2)
is similar to:
PaperBLAST

URODH_PSEPK / Q88NN6: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas putida
PP_1171: Uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida
Q88NN6: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida

33% id,
63% cov

HSERO_RS23040: D-galacturonate dehydrogenase (EC 1.1.1.203) from Herbaspirillum seropedicae

34% id,
58% cov

URODH_PSESM / Q888H1: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas syringae
udh / Q888H1: uronic acid dehydrogenase subunit (EC 1.1.1.203) from Pseudomonas syringae
Q888H1: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas syringae

31% id,
61% cov

More...

Pf1N1B4_5885: dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)
is similar to:
PaperBLAST

HSERO_RS23040: D-galacturonate dehydrogenase (EC 1.1.1.203) from Herbaspirillum seropedicae

29% id,
59% cov

PS417_17360: D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas simiae

27% id,
58% cov

Pf1N1B4_1271: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

D6Y7Y8: uronate dehydrogenase (EC 1.1.1.203) from Thermobispora bispora

27% id,
55% cov

Pf1N1B4_4138: Dihydroflavonol-4-reductase (EC 1.1.1.219)
is similar to:
PaperBLAST

HSERO_RS23040: D-galacturonate dehydrogenase (EC 1.1.1.203) from Herbaspirillum seropedicae

35% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory