Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 9 curated entries in PaperBLAST's database that match '1.1.1.31' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_1228: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
is similar to:
PaperBLAST

AO353_05985: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

97% id,
100% cov

PfGW456L13_5145: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

97% id,
100% cov

mmsB / Q76KL5: 3-hydroxyisobutyrate dehydrogenase subunit (EC 1.1.1.31) from Pseudomonas putida
Q76KL5: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas putida

85% id,
99% cov

More...

Pf1N1B4_5077: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
is similar to:
PaperBLAST

Psest_2438: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas stutzeri

34% id,
98% cov

MMSB_PSEAE / P28811: 3-hydroxyisobutyrate dehydrogenase; HIBADH; EC 1.1.1.31 from Pseudomonas aeruginosa

32% id,
99% cov

P9WNY5: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Mycobacterium tuberculosis

31% id,
96% cov

More...

Pf1N1B4_1220: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
is similar to:
PaperBLAST

AO353_05985: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

33% id,
98% cov

PfGW456L13_5145: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

32% id,
97% cov

Psest_2438: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas stutzeri

32% id,
97% cov

More...

Pf1N1B4_3659: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
is similar to:
PaperBLAST

Psest_2438: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas stutzeri

36% id,
85% cov

AO353_05985: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Pseudomonas fluorescens

34% id,
84% cov

P9WNY5: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) from Mycobacterium tuberculosis

33% id,
86% cov

More...

Pf1N1B4_4725: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
is similar to:
PaperBLAST

MMSB_PSEAE / P28811: 3-hydroxyisobutyrate dehydrogenase; HIBADH; EC 1.1.1.31 from Pseudomonas aeruginosa

27% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory