Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 6 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_4511: UDP-glucose 4-epimerase (EC
is similar to:

ARADH_HALVD / D4GP33: L-arabinose 1-dehydrogenase (NAD(P)(+)); L-AraDH; EC from Haloferax volcanii
xacB / D4GP33: L-arabinose 1-dehydrogenase (NADP+) monomer (EC from Haloferax volcanii
D4GP33: L-arabinose 1-dehydrogenase [NAD(P)+] (EC; L-arabinose 1-dehydrogenase (EC from Haloferax volcanii

30% id,
99% cov

Pf1N1B4_4526: Myo-inositol 2-dehydrogenase (EC
is similar to:

ARAA_AZOBR / Q53TZ2: L-arabinose 1-dehydrogenase (NAD(P)(+)); D-galactose 1-dehydrogenase; EC; EC; EC from Azospirillum brasilense
Q53TZ2: L-arabinose 1-dehydrogenase [NAD(P)+] (EC from Azospirillum brasilense

24% id,
80% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory