Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 6 curated entries in PaperBLAST's database that match '1.1.99.2' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_4264: Aminobutyraldehyde dehydrogenase (EC 1.2.1.19)
is similar to:
PaperBLAST

L2HDH_ACHAE / A0A0M7LBC1: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Achromobacter aegrifaciens

66% id,
99% cov

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis

59% id,
96% cov

L2HDH_ARATH / Q9LES4: L-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.2 from Arabidopsis thaliana

43% id,
89% cov

More...

Pf1N1B4_5965: D-amino-acid oxidase (EC 1.4.3.3)
is similar to:
PaperBLAST

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis

25% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory