Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 25 curated entries in PaperBLAST's database that match '1.13.11.27'.

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_5003: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
is similar to:
PaperBLAST

P80064: 4-hydroxyphenylpyruvate dioxygenase subunit (EC 1.13.11.27) from Pseudomonas sp.
P80064: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

98% id,
100% cov

AO353_26925: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

98% id,
100% cov

PfGW456L13_2935: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

97% id,
100% cov

More...

Pf1N1B4_1105: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
is similar to:
PaperBLAST

Q8EKK9: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Shewanella oneidensis

39% id,
91% cov

Pf1N1B4_4968: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
is similar to:
PaperBLAST

Q8EKK9: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Shewanella oneidensis

35% id,
88% cov

Q8EKK9: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Shewanella oneidensis

39% id,
79% cov

Pf1N1B4_2747: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
is similar to:
PaperBLAST

Q6KZ98: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Picrophilus torridus

29% id,
95% cov

Pf1N1B4_5107: Putative collagenase
is similar to:
PaperBLAST

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

31% id,
73% cov

Pf1N1B4_5746: FIG139552: Putative protease
is similar to:
PaperBLAST

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

30% id,
32% cov

Pf1N1B4_3925: Putative protease
is similar to:
PaperBLAST

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

33% id,
24% cov

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

32% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory