Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 157 curated entries in PaperBLAST's database that match '1.13.11.5'.

These curated entries have 120 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_1025: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
is similar to:
PaperBLAST

PfGW456L13_4962: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens

96% id,
100% cov

AO353_15550: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens

94% id,
100% cov

Pf6N2E2_5290: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens

90% id,
100% cov

More...

Pf1N1B4_4199: Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8)
is similar to:
PaperBLAST

GALA_PSEPK / Q88JX5: Gallate dioxygenase; Gallate degradation protein A; EC 1.13.11.57 from Pseudomonas putida
gllA / Q88JX5: gallate dioxygenase monomer (EC 1.13.11.57) from Pseudomonas putida

84% id,
100% cov

desB / Q5NTE5: gallate dioxygenase monomer (EC 1.13.11.57) from Sphingomonas paucimobilis
Q5NTE5: gallate dioxygenase (EC 1.13.11.57) from Sphingomonas paucimobilis
G2IKE5: gallate dioxygenase (EC 1.13.11.57) from Sphingobium sp.

60% id,
100% cov

PmdB / Q8RNX9: protocatechuate 4,5-dioxygenase β subunit (EC 1.13.11.8; EC 1.13.11.57) from Comamonas testosteroni

43% id,
100% cov

More...

Pf1N1B4_3782: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)
is similar to:
PaperBLAST

MTND_KLEOX / Q9ZFE7: Acireductone dioxygenase; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; DHK-MTPene dioxygenase; Acireductone dioxygenase (Fe(2+)-requiring); ARD'; Fe-ARD; Acireductone dioxygenase (Ni(2+)-requiring); ARD; Ni-ARD; EC 1.13.11.54; EC 1.13.11.53 from Klebsiella oxytoca
mtnD / Q9ZFE7: acireductone dioxygenase (EC 1.13.11.54; EC 1.13.11.53) from Klebsiella oxytoca
Q9ZFE7: acireductone dioxygenase (Ni2+-requiring) (EC 1.13.11.53); acireductone dioxygenase [iron(II)-requiring] (EC 1.13.11.54) from Klebsiella oxytoca

57% id,
99% cov

Pf1N1B4_264: FIG074102: hypothetical protein
is similar to:
PaperBLAST

desB / Q5NTE5: gallate dioxygenase monomer (EC 1.13.11.57) from Sphingomonas paucimobilis
Q5NTE5: gallate dioxygenase (EC 1.13.11.57) from Sphingomonas paucimobilis
G2IKE5: gallate dioxygenase (EC 1.13.11.57) from Sphingobium sp.

29% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory