Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 163 curated entries in PaperBLAST's database that match '1.13.11.5'.

These curated entries have 126 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_1025: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) is similar to:	PaperBLAST
PfGW456L13_4962: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens	96% id, 100% cov
AO353_15550: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens	94% id, 100% cov
Pf6N2E2_5290: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens	90% id, 100% cov
HGD_PSEPK / Q88E47: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida Q88E47: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas putida	82% id, 100% cov
HGD_PSEPU / Q6EMI9: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida	80% id, 99% cov
RR42_RS31275: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Cupriavidus basilensis	60% id, 98% cov
HGD_RHIME / Q9X4F5: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Rhizobium meliloti	54% id, 95% cov
HGD_EMENI / Q00667: Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Emericella nidulans GI\|2832726: homogentisate dioxygenase; EC 1.13.11.5; EC 1.13.11.15 from Emericella nidulans	52% id, 97% cov
HMGA_ASPFU / Q4WHT9: Homogentisate 1,2-dioxygenase hmgA; Homogentisate oxygenase hmgA; Homogentisic acid oxidase hmgA; Homogentisicase hmgA; L-tyrosine degradation gene cluster protein hmgA; Pyomelanin biosynthesis cluster protein hmgA; EC 1.13.11.5 from Aspergillus fumigatus	52% id, 97% cov
HGD_MOUSE / O09173: Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Mus musculus	51% id, 98% cov
Q9ZRA2: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Arabidopsis thaliana	53% id, 93% cov
B8YB76: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Bos taurus	51% id, 98% cov
HGD_HUMAN / Q93099: Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Homo sapiens HGD / Q93099: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Homo sapiens	50% id, 98% cov
HGD_CAEEL / Q9Y041: Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Caenorhabditis elegans	49% id, 98% cov
Q6JDV6: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Exophiala lecanii-corni	49% id, 90% cov
More...

Pf1N1B4_4199: Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8) is similar to:	PaperBLAST
GALA_PSEPK / Q88JX5: Gallate dioxygenase; Gallate degradation protein A; EC 1.13.11.57 from Pseudomonas putida gllA / Q88JX5: gallate dioxygenase monomer (EC 1.13.11.57) from Pseudomonas putida	84% id, 100% cov
desB / Q5NTE5: gallate dioxygenase monomer (EC 1.13.11.57) from Sphingomonas paucimobilis Q5NTE5: gallate dioxygenase (EC 1.13.11.57) from Sphingomonas paucimobilis G2IKE5: gallate dioxygenase (EC 1.13.11.57) from Sphingobium sp.	60% id, 100% cov
PmdB / Q8RNX9: protocatechuate 4,5-dioxygenase β subunit (EC 1.13.11.8; EC 1.13.11.57) from Comamonas testosteroni	43% id, 100% cov
PmdA / Q8RNY0: protocatechuate 4,5-dioxygenase α subunit (EC 1.13.11.8; EC 1.13.11.57) from Comamonas testosteroni	29% id, 66% cov
More...

Pf1N1B4_3782: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)
is similar to:

PaperBLAST

MTND_KLEOX / Q9ZFE7: Acireductone dioxygenase; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; DHK-MTPene dioxygenase; Acireductone dioxygenase (Fe(2+)-requiring); ARD'; Fe-ARD; Acireductone dioxygenase (Ni(2+)-requiring); ARD; Ni-ARD; EC 1.13.11.54; EC 1.13.11.53 from Klebsiella oxytoca
mtnD / Q9ZFE7: acireductone dioxygenase (EC 1.13.11.54; EC 1.13.11.53) from Klebsiella oxytoca
Q9ZFE7: acireductone dioxygenase (Ni2+-requiring) (EC 1.13.11.53); acireductone dioxygenase [iron(II)-requiring] (EC 1.13.11.54) from Klebsiella oxytoca

57% id,
99% cov

Pf1N1B4_264: FIG074102: hypothetical protein is similar to:	PaperBLAST
desB / Q5NTE5: gallate dioxygenase monomer (EC 1.13.11.57) from Sphingomonas paucimobilis Q5NTE5: gallate dioxygenase (EC 1.13.11.57) from Sphingomonas paucimobilis G2IKE5: gallate dioxygenase (EC 1.13.11.57) from Sphingobium sp.	29% id, 31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory