Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 31 curated entries in PaperBLAST's database that match '1.2.1.88' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 27 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_1489: Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
is similar to:
PaperBLAST

AO353_12810: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas fluorescens

96% id,
100% cov

PUTA_ECOLI / P09546: Bifunctional protein PutA; EC 1.5.5.2; EC 1.2.1.88 from Escherichia coli
PutA / B1014: fused DNA-binding transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase PutA (EC 1.5.5.2; EC 1.2.1.88) from Escherichia coli
PutA / P09546: fused DNA-binding transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase PutA (EC 1.5.5.2; EC 1.2.1.88) from Escherichia coli
P09546: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); proline dehydrogenase (EC 1.5.5.2) from Escherichia coli

73% id,
100% cov

BWI76_RS10795: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Klebsiella michiganensis

73% id,
100% cov

More...

Pf1N1B4_1109: 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

37% id,
90% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

36% id,
90% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

35% id,
90% cov

More...

Pf1N1B4_2417: Betaine aldehyde dehydrogenase (EC 1.2.1.8)
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

35% id,
92% cov

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

32% id,
91% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

32% id,
90% cov

More...

Pf1N1B4_3024: 4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)
is similar to:
PaperBLAST

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

34% id,
91% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

34% id,
88% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

32% id,
91% cov

More...

Pf1N1B4_695: Aldehyde dehydrogenase (EC 1.2.1.3)
is similar to:
PaperBLAST

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

34% id,
91% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

34% id,
89% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

32% id,
92% cov

More...

Pf1N1B4_171: Aldehyde dehydrogenase (EC 1.2.1.3)
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

34% id,
92% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

32% id,
92% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

32% id,
92% cov

More...

Pf1N1B4_5695: Aldehyde dehydrogenase A (EC 1.2.1.22)
is similar to:
PaperBLAST

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

33% id,
91% cov

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

33% id,
91% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

32% id,
91% cov

More...

Pf1N1B4_4355: Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-)
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

32% id,
93% cov

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

29% id,
93% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

30% id,
90% cov

More...

Pf1N1B4_1229: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

32% id,
92% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

31% id,
93% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

31% id,
92% cov

More...

Pf1N1B4_1734: Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16)
is similar to:
PaperBLAST

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

33% id,
90% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

32% id,
90% cov

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

32% id,
90% cov

More...

Pf1N1B4_2673: Aldehyde dehydrogenase (EC 1.2.1.3)
is similar to:
PaperBLAST

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

34% id,
88% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

31% id,
95% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

32% id,
90% cov

More...

Pf1N1B4_4502: Aldehyde dehydrogenase (EC 1.2.1.3)
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

32% id,
90% cov

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

33% id,
87% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

32% id,
89% cov

More...

Pf1N1B4_1238: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
is similar to:
PaperBLAST

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

31% id,
93% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

30% id,
93% cov

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

30% id,
93% cov

More...

Pf1N1B4_2132: Aldehyde dehydrogenase (EC 1.2.1.3)
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

32% id,
91% cov

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

30% id,
89% cov

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

30% id,
91% cov

More...

Pf1N1B4_5591: Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28)
is similar to:
PaperBLAST

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

32% id,
92% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

31% id,
90% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

30% id,
89% cov

More...

Pf1N1B4_4931: Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79)
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

32% id,
91% cov

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

30% id,
93% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

31% id,
90% cov

More...

Pf1N1B4_3444: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

31% id,
90% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

31% id,
90% cov

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

31% id,
88% cov

More...

Pf1N1B4_3029: 4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)
is similar to:
PaperBLAST

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

31% id,
88% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

31% id,
88% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

30% id,
89% cov

More...

Pf1N1B4_4277: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

30% id,
92% cov

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

29% id,
94% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

29% id,
90% cov

More...

Pf1N1B4_5616: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16)
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

31% id,
86% cov

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

30% id,
85% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

30% id,
85% cov

More...

Pf1N1B4_1384: L-pipecolate dehydrogenase (EC 1.5.99.3)
is similar to:
PaperBLAST

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

27% id,
95% cov

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

28% id,
91% cov

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

28% id,
90% cov

More...

Pf1N1B4_4920: Aldehyde dehydrogenase (EC 1.2.1.3)
is similar to:
PaperBLAST

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

30% id,
87% cov

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

28% id,
91% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

28% id,
91% cov

More...

Pf1N1B4_4244: Aldehyde dehydrogenase (EC 1.2.1.3)
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

27% id,
88% cov

ROCA2_BACSU / P94391: 1-pyrroline-5-carboxylate dehydrogenase 2; P5C dehydrogenase 2; L-glutamate gamma-semialdehyde dehydrogenase; EC 1.2.1.88 from Bacillus subtilis

28% id,
81% cov

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

29% id,
77% cov

More...

Pf1N1B4_5684: Glyceraldehyde-3-phosphate dehydrogenase, putative
is similar to:
PaperBLAST

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

25% id,
89% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

25% id,
88% cov

Q9RW56: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Deinococcus radiodurans

25% id,
85% cov

More...

Pf1N1B4_2315: Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus

25% id,
86% cov

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans

26% id,
74% cov

Q65NN2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus licheniformis

27% id,
67% cov

More...

Pf1N1B4_5978: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)
is similar to:
PaperBLAST

RR42_RS20125: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Cupriavidus basilensis

27% id,
35% cov

Pf1N1B4_3385: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)
is similar to:
PaperBLAST

RR42_RS20125: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Cupriavidus basilensis

27% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 26 reading frames. Except for 4 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3400960-3402597 (frame -3) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans
Also see hits to annotated proteins above

33% id,
95% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus
Also see hits to annotated proteins above

33% id,
91% cov

2440631-2442136 (frame +2) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus
Also see hits to annotated proteins above

31% id,
97% cov

3839015-3840631 (frame +2) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus
Also see hits to annotated proteins above

30% id,
96% cov

3406793-3408352 (frame -2) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Q9K9B2: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Bacillus halodurans
Also see hits to annotated proteins above

31% id,
93% cov

Q72IB9: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) from Thermus thermophilus
Also see hits to annotated proteins above

30% id,
90% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory