Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 41 curated entries in PaperBLAST's database that match '1.3.3.6'.

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_1816: Glutaryl-CoA dehydrogenase (EC 1.3.99.7)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

37% id,
86% cov

ACOX2_CUCMA / O64894: Acyl-coenzyme A oxidase, peroxisomal; AOX; Long-chain acyl-CoA oxidase; EC 1.3.3.6 from Cucurbita maxima

26% id,
25% cov

ACOX2_ARATH / O65201: Acyl-coenzyme A oxidase 2, peroxisomal; AOX 2; Long-chain acyl-CoA oxidase; AtCX2; EC 1.3.3.6 from Arabidopsis thaliana
ACX2 / O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

27% id,
21% cov

Pf1N1B4_3987: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

29% id,
86% cov

Pf1N1B4_4787: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

30% id,
84% cov

Pf1N1B4_4789: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

29% id,
85% cov

ACOX2_ARATH / O65201: Acyl-coenzyme A oxidase 2, peroxisomal; AOX 2; Long-chain acyl-CoA oxidase; AtCX2; EC 1.3.3.6 from Arabidopsis thaliana
ACX2 / O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
O65201: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

26% id,
56% cov

ACOX2_CUCMA / O64894: Acyl-coenzyme A oxidase, peroxisomal; AOX; Long-chain acyl-CoA oxidase; EC 1.3.3.6 from Cucurbita maxima

25% id,
53% cov

Pf1N1B4_5610: Probable acyl-CoA dehydrogenase (EC 1.3.99.3)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

28% id,
80% cov

Pf1N1B4_480: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

25% id,
65% cov

Pf1N1B4_966: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
is similar to:
PaperBLAST

Q33DR1: acyl-CoA oxidase (EC 1.3.3.6) from Arthrobacter sp.

27% id,
52% cov

Q33DR0: acyl-CoA oxidase (EC 1.3.3.6) from Paenarthrobacter ureafaciens

28% id,
47% cov

ACOX1_ARATH / O65202: Peroxisomal acyl-coenzyme A oxidase 1; AOX 1; Long-chain acyl-CoA oxidase; AtCX1; EC 1.3.3.6 from Arabidopsis thaliana
ACX1 / O65202: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
O65202: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

24% id,
53% cov

More...

Pf1N1B4_5028: Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)
is similar to:
PaperBLAST

fabX / O25465: decanoate oxidase (EC 1.3.3.6; EC 5.3.3.14) from Helicobacter pylori

34% id,
32% cov

Pf1N1B4_223: Citronellyl-CoA dehydrogenase
is similar to:
PaperBLAST

Mlut_11700 / C5CBS9: acyl coA dehydrogenase (EC 1.3.3.6) from Micrococcus luteus

25% id,
26% cov

Pf1N1B4_3993: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)
is similar to:
PaperBLAST

O62138: acyl-CoA oxidase (EC 1.3.3.6) from Caenorhabditis elegans

24% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4429386-4430645 (frame -1) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Also see hits to annotated proteins above

28% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory