Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 6 curated entries in PaperBLAST's database that match '1.4.1.18' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_5603: Threonine dehydrogenase and related Zn-dependent dehydrogenases
is similar to:
PaperBLAST

Q3S559: lysine 6-dehydrogenase (EC 1.4.1.18) from Achromobacter denitrificans

24% id,
57% cov

Pf1N1B4_2461: Threonine dehydrogenase and related Zn-dependent dehydrogenases
is similar to:
PaperBLAST

Q3S559: lysine 6-dehydrogenase (EC 1.4.1.18) from Achromobacter denitrificans

24% id,
54% cov

Pf1N1B4_698: Rrf2-linked NADH-flavin reductase
is similar to:
PaperBLAST

Q5LX24: lysine 6-dehydrogenase (EC 1.4.1.18) from Ruegeria pomeroyi

39% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory