Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_2930: COG3380: Amine oxidase, flavin-containing
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

25% id,
39% cov

Pf1N1B4_2439: DgcA Dimethylglycine demethylase subunit A
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

33% id,
27% cov

Pf1N1B4_4928: Ferredoxin reductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

28% id,
27% cov

Pf1N1B4_2457: Sarcosine oxidase alpha subunit (EC 1.5.3.1)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

29% id,
22% cov

Pf1N1B4_5967: Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

31% id,
18% cov

Pf1N1B4_3919: Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

54% id,
8% cov

Pf1N1B4_3970: Ferredoxin reductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

45% id,
9% cov

Pf1N1B4_4516: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

46% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory