Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 24 curated entries in PaperBLAST's database that match '1.4.4.2'.

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_621: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
is similar to:
PaperBLAST

PfGW456L13_1868: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

96% id,
100% cov

AO353_03500: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

95% id,
100% cov

Pf6N2E2_5558: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

93% id,
100% cov

More...

Pf1N1B4_2236: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
is similar to:
PaperBLAST

GCSP_ECOLI / P33195: Glycine dehydrogenase (decarboxylating); Glycine cleavage system P-protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Escherichia coli
GcvP / b2903: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli
gcvP: glycine dehydrogenase [decarboxylating]; EC 1.4.4.2 from Escherichia coli
gcvP / P33195: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli

66% id,
100% cov

BWI76_RS23870: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Klebsiella michiganensis

65% id,
100% cov

Pf6N2E2_5558: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

60% id,
100% cov

More...

Pf1N1B4_2235: Glycine cleavage system H protein
is similar to:
PaperBLAST

P25855: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

48% id,
70% cov

P23434: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

51% id,
66% cov

Pf1N1B4_620: Glycine cleavage system H protein
is similar to:
PaperBLAST

P23434: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

46% id,
73% cov

P25855: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

38% id,
77% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2548150-2548563 (frame +1) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

P25855: glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana
Also see hits to annotated proteins above

47% id,
76% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory