Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 2 curated entries in PaperBLAST's database that match '1.5.1.12'.

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 24 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_1489: Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

73% id,
100% cov

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

32% id,
93% cov

Pf1N1B4_3029: 4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

30% id,
84% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

29% id,
34% cov

Pf1N1B4_695: Aldehyde dehydrogenase (EC 1.2.1.3)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

30% id,
83% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

30% id,
34% cov

Pf1N1B4_2417: Betaine aldehyde dehydrogenase (EC 1.2.1.8)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

28% id,
86% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

29% id,
33% cov

Pf1N1B4_171: Aldehyde dehydrogenase (EC 1.2.1.3)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

28% id,
85% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

28% id,
34% cov

Pf1N1B4_1109: 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

27% id,
85% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

31% id,
34% cov

Pf1N1B4_4355: Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

28% id,
82% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

29% id,
34% cov

Pf1N1B4_3024: 4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

27% id,
82% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

31% id,
33% cov

Pf1N1B4_1238: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

26% id,
85% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

27% id,
33% cov

Pf1N1B4_1734: Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

27% id,
84% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

29% id,
34% cov

Pf1N1B4_2132: Aldehyde dehydrogenase (EC 1.2.1.3)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

27% id,
82% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

29% id,
34% cov

Pf1N1B4_1229: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

31% id,
69% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

27% id,
36% cov

Pf1N1B4_5684: Glyceraldehyde-3-phosphate dehydrogenase, putative
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans

23% id,
88% cov

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

23% id,
35% cov

Pf1N1B4_4931: Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

32% id,
34% cov

Pf1N1B4_1384: L-pipecolate dehydrogenase (EC 1.5.99.3)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

30% id,
35% cov

Pf1N1B4_5695: Aldehyde dehydrogenase A (EC 1.2.1.22)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

29% id,
34% cov

Pf1N1B4_5591: Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

27% id,
37% cov

Pf1N1B4_3444: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

30% id,
33% cov

Pf1N1B4_4277: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

28% id,
33% cov

Pf1N1B4_4920: Aldehyde dehydrogenase (EC 1.2.1.3)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

28% id,
34% cov

Pf1N1B4_4502: Aldehyde dehydrogenase (EC 1.2.1.3)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

27% id,
33% cov

Pf1N1B4_2673: Aldehyde dehydrogenase (EC 1.2.1.3)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

26% id,
34% cov

Pf1N1B4_2315: Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

26% id,
33% cov

Pf1N1B4_5616: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16)
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

26% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 24 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3406793-3408352 (frame -2) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans
Also see hits to annotated proteins above

30% id,
92% cov

211682-213349 (frame +2) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

prnC: delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 from Emericella nidulans
Also see hits to annotated proteins above

28% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory