Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 107 curated entries in PaperBLAST's database that match '2.1.2.1'.

These curated entries have 71 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_623: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
is similar to:
PaperBLAST

PfGW456L13_1866: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

97% id,
100% cov

Pf6N2E2_5556: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

95% id,
100% cov

PS417_22370: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas simiae

90% id,
100% cov

More...

Pf1N1B4_2454: Serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

L7Y8B0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas plecoglossicida

95% id,
100% cov

PfGW456L13_2685: Glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens

89% id,
100% cov

A1SUU0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Psychromonas ingrahamii

74% id,
100% cov

More...

Pf1N1B4_2778: Serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

L7Y8B0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas plecoglossicida

81% id,
100% cov

PfGW456L13_2685: Glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens

78% id,
100% cov

A1SUU0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Psychromonas ingrahamii

74% id,
100% cov

More...

Pf1N1B4_2161: Serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

R9YJZ9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Shewanella algae

69% id,
100% cov

GLYA_SALTY / P0A2E1: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Salmonella typhimurium
glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Salmonella enterica
P0A2E1: glycine hydroxymethyltransferase (EC 2.1.2.1) from Salmonella enterica

67% id,
100% cov

GLYA_ECOLI / P0A825: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Escherichia coli
GlyA / b2551: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli
glyA / RF|NP_417046: serine hydroxymethyltransferase; EC 2.1.2.1 from Escherichia coli
glyA / P0A825: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli

66% id,
100% cov

More...

Pf1N1B4_4330: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)
is similar to:
PaperBLAST

PANB_MYCTU / P9WIL7: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Mycobacterium tuberculosis

59% id,
98% cov

PANB_CORGL / Q9X712: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Corynebacterium glutamicum

53% id,
98% cov

PANB_ECOLI / P31057: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Escherichia coli
PanB / b0134: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) from Escherichia coli
panB / GB|BAB96711.1: 3-methyl-2-oxobutanoate hydroxymethyltransferase; EC 2.1.2.11 from Escherichia coli
panB / P31057: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) from Escherichia coli

46% id,
98% cov

More...

Pf1N1B4_2854: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)
is similar to:
PaperBLAST

PANB_ECOLI / P31057: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Escherichia coli
PanB / b0134: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) from Escherichia coli
panB / GB|BAB96711.1: 3-methyl-2-oxobutanoate hydroxymethyltransferase; EC 2.1.2.11 from Escherichia coli
panB / P31057: 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) from Escherichia coli

55% id,
100% cov

PANB_CORGL / Q9X712: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Corynebacterium glutamicum

44% id,
95% cov

PANB_MYCTU / P9WIL7: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Mycobacterium tuberculosis

45% id,
91% cov

More...

Pf1N1B4_2234: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
is similar to:
PaperBLAST

GCST_ECOLI / P27248: Aminomethyltransferase; Glycine cleavage system T protein; EC 2.1.2.10 from Escherichia coli
GcvT / b2905: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli
gcvT: aminomethyltransferase; EC 2.1.2.10 from Escherichia coli
gcvT / P27248: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli

54% id,
77% cov

BWI76_RS23880: Aminomethyltransferase (EC 2.1.2.10) from Klebsiella michiganensis

53% id,
77% cov

PfGW456L13_1866: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

37% id,
75% cov

More...

Pf1N1B4_3697: Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
is similar to:
PaperBLAST

WBKC_BRUA2 / Q2YML4: GDP-perosamine N-formyltransferase; EC 2.1.2.14 from Brucella abortus
WBKC_BRUME / F8WJP6: GDP-perosamine N-formyltransferase; EC 2.1.2.14 from Brucella melitensis

28% id,
51% cov

ARNA_ECOLI / P77398: Bifunctional polymyxin resistance protein ArnA; Polymyxin resistance protein PmrI; EC 2.1.2.13; EC 1.1.1.305 from Escherichia coli
ArnA / b2255: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli
arnA / P77398: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli
A0A140N587: UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) (EC 1.1.1.305); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.13) from Escherichia coli

26% id,
18% cov

Pf1N1B4_1913: Methionyl-tRNA formyltransferase (EC 2.1.2.9)
is similar to:
PaperBLAST

ARNA_ECOLI / P77398: Bifunctional polymyxin resistance protein ArnA; Polymyxin resistance protein PmrI; EC 2.1.2.13; EC 1.1.1.305 from Escherichia coli
ArnA / b2255: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli
arnA / P77398: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli
A0A140N587: UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) (EC 1.1.1.305); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.13) from Escherichia coli

28% id,
46% cov

ARNA_SALTY / O52325: Bifunctional polymyxin resistance protein ArnA; EC 2.1.2.13; EC 1.1.1.305 from Salmonella typhimurium

30% id,
41% cov

ARNA_YERPS / Q93PD8: Bifunctional polymyxin resistance protein ArnA; EC 2.1.2.13; EC 1.1.1.305 from Yersinia pseudotuberculosis

30% id,
41% cov

Pf1N1B4_2460: Formyltetrahydrofolate deformylase (EC 3.5.1.10)
is similar to:
PaperBLAST

ARNA_SALTY / O52325: Bifunctional polymyxin resistance protein ArnA; EC 2.1.2.13; EC 1.1.1.305 from Salmonella typhimurium

28% id,
13% cov

ARNA_ECOLI / P77398: Bifunctional polymyxin resistance protein ArnA; Polymyxin resistance protein PmrI; EC 2.1.2.13; EC 1.1.1.305 from Escherichia coli
ArnA / b2255: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli
arnA / P77398: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli
A0A140N587: UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) (EC 1.1.1.305); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.13) from Escherichia coli

26% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory