Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 67 curated entries in PaperBLAST's database that match '2.1.2.1' as complete word(s).

These curated entries have 45 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_2454: Serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

L7Y8B0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas plecoglossicida

95% id,
100% cov

PfGW456L13_2685: Glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens

89% id,
100% cov

A1SUU0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Psychromonas ingrahamii

74% id,
100% cov

More...

Pf1N1B4_2778: Serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

L7Y8B0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas plecoglossicida

81% id,
100% cov

PfGW456L13_2685: Glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens

78% id,
100% cov

A1SUU0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Psychromonas ingrahamii

74% id,
100% cov

More...

Pf1N1B4_2161: Serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

R9YJZ9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Shewanella algae

69% id,
100% cov

GLYA_SALTY / P0A2E1: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Salmonella typhimurium
glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Salmonella enterica
P0A2E1: glycine hydroxymethyltransferase (EC 2.1.2.1) from Salmonella enterica

67% id,
100% cov

GLYA_ECOLI / P0A825: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Escherichia coli
GlyA / b2551: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli
glyA / RF|NP_417046: serine hydroxymethyltransferase; EC 2.1.2.1 from Escherichia coli
glyA / P0A825: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli
P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

66% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory