Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 48 curated entries in PaperBLAST's database that match '2.1.3.3'.

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_762: Ornithine carbamoyltransferase (EC 2.1.3.3)
is similar to:
PaperBLAST

OTC1A_PSESH / Q02047: Ornithine carbamoyltransferase 1, anabolic; OTCase 1; Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive; SOCT; EC 2.1.3.3 from Pseudomonas savastanoi

88% id,
100% cov

OTCA_PSEAE / P11724: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa

83% id,
100% cov

HSERO_RS07185: Ornithine carbamoyltransferase (EC 2.1.3.3) from Herbaspirillum seropedicae

52% id,
98% cov

More...

Pf1N1B4_616: Ornithine carbamoyltransferase (EC 2.1.3.3)
is similar to:
PaperBLAST

OTCC_PSEAE / P08308: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa

87% id,
100% cov

OTC1_ECOLI / P04391: Ornithine carbamoyltransferase subunit I; OTCase-1; EC 2.1.3.3 from Escherichia coli
ArgI / b4254: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli
argI / GB|AAA23483.1: ornithine carbamoyltransferase, subunit I; EC 2.1.3.3 from Escherichia coli
argI / P04391: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli

58% id,
98% cov

OTC2_ECOLI / P06960: Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 from Escherichia coli
ArgF / b0273: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli
argF / P06960: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli

57% id,
99% cov

More...

Pf1N1B4_2347: Aspartate carbamoyltransferase (EC 2.1.3.2)
is similar to:
PaperBLAST

OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus
Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus

30% id,
97% cov

O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi

30% id,
96% cov

OTC_MYCBO / P0A5M9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium bovis
OTC_MYCTU / P9WIT9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium tuberculosis
P0A5M9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis
P9WIT9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis

29% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory