Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 30 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_847: 2-isopropylmalate synthase (EC
is similar to:

LEU1_YEAST / P06208: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC from Saccharomyces cerevisiae

51% id,
94% cov

LEU9_YEAST / Q12166: 2-isopropylmalate synthase 2, mitochondrial; Alpha-IPM synthase 2; Alpha-isopropylmalate synthase 2; Alpha-isopropylmalate synthase II; EC from Saccharomyces cerevisiae

50% id,
95% cov

P9WQB3: 2-isopropylmalate synthase (EC from Mycobacterium tuberculosis

53% id,
86% cov


Pf1N1B4_2011: Pyruvate carboxyl transferase subunit B (EC
is similar to:

LEU1_METJA / Q58595: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC from Methanocaldococcus jannaschii
Q58595: 2-isopropylmalate synthase (EC from Methanocaldococcus jannaschii

25% id,
36% cov

LEU11_LEPIN / Q8F445: 2-isopropylmalate synthase 1; Alpha-IPM synthase 1; Alpha-isopropylmalate synthase 1; EC from Leptospira interrogans

24% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory