Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_847: 2-isopropylmalate synthase (EC 2.3.3.13)
is similar to:
PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

27% id,
94% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

28% id,
85% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

26% id,
50% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory