Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 8 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 0 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

333741-334850 (frame +3) on unitig_3|quiver|pilon
is similar to:

TREPH_GRIFR / O75003: Trehalose phosphorylase; Trehalose synthase; TSase; EC from Grifola frondosa
BAA31350.1: trehalose synthase (EC
TSase / O75003: trehalose phosphorylase subunit (EC from Grifola frondosa

33% id,
13% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory