Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 14 curated entries in PaperBLAST's database that match '2.6.1.27' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_27: Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57)
is similar to:
PaperBLAST

TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli

52% id,
100% cov

AspC / b0928: aspartate aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.7; EC 2.6.1.3) from Escherichia coli

47% id,
100% cov

Pf1N1B4_3564: Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

AspC / b0928: aspartate aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.7; EC 2.6.1.3) from Escherichia coli

46% id,
99% cov

TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli

43% id,
99% cov

Pf1N1B4_4476: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
is similar to:
PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

34% id,
99% cov

Pf1N1B4_160: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

S4UF58: tryptophan transaminase (EC 2.6.1.27) from Malassezia furfur

23% id,
96% cov

Pf1N1B4_555: Uncharacterized PLP-dependent aminotransferase YfdZ
is similar to:
PaperBLAST

S4UF58: tryptophan transaminase (EC 2.6.1.27) from Malassezia furfur

24% id,
87% cov

Pf1N1B4_818: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

S4UF58: tryptophan transaminase (EC 2.6.1.27) from Malassezia furfur

25% id,
73% cov

Pf1N1B4_4186: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

S4UF58: tryptophan transaminase (EC 2.6.1.27) from Malassezia furfur

24% id,
64% cov

Pf1N1B4_2018: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

S4UF58: tryptophan transaminase (EC 2.6.1.27) from Malassezia furfur

26% id,
59% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory