Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 31 curated entries in PaperBLAST's database that match '2.6.1.52'.

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_351: Phosphoserine aminotransferase (EC 2.6.1.52) is similar to:	PaperBLAST
SERC_ECOLI / P23721: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 from Escherichia coli SerC / b0907: phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli serC: phosphoserine aminotransferase; EC 2.6.1.52 from Escherichia coli serC / P23721: phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli P23721: phosphoserine transaminase (EC 2.6.1.52) from Escherichia coli	56% id, 81% cov
Q2F5M8: phosphoserine transaminase (EC 2.6.1.52) from Bombyx mori	53% id, 81% cov
SERC_DROME / Q9VAN0: Probable phosphoserine aminotransferase; PSAT; Phosphohydroxythreonine aminotransferase; EC 2.6.1.52 from Drosophila melanogaster	51% id, 81% cov
SERC_HUMAN / Q9Y617: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 from Homo sapiens PSAT1 / Q9Y617: Phosphoserine aminotransferase (EC 2.6.1.52) from Homo sapiens Q9Y617: glycine transaminase (EC 2.6.1.4); phosphoserine transaminase (EC 2.6.1.52) from Homo sapiens	51% id, 80% cov
SERC_ALKAL / Q9RME2: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 from Alkalihalobacillus alcalophilus Q9RME2: phosphoserine transaminase (EC 2.6.1.52) from Alkalihalobacillus alcalophilus	50% id, 81% cov
SERC_NIACI / Q59196: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 from Niallia circulans Q59196: phosphoserine transaminase (EC 2.6.1.52) from Niallia circulans	49% id, 81% cov
PSAT1 / A2FXW5: phosphoserine transaminase (EC 2.6.1.52) from Trichomonas vaginalis	44% id, 80% cov
SERC_SPIOL / P52877: Phosphoserine aminotransferase, chloroplastic; PSAT; Phosphohydroxythreonine aminotransferase; EC 2.6.1.52 from Spinacia oleracea	51% id, 69% cov
SERB2_ARATH / Q9SHP0: Phosphoserine aminotransferase 2, chloroplastic; AtPSAT2; EC 2.6.1.52 from Arabidopsis thaliana Q9SHP0: phosphoserine transaminase (EC 2.6.1.52) from Arabidopsis thaliana	50% id, 70% cov
V9NC98: phosphoserine transaminase (EC 2.6.1.52) from Acanthamoeba castellanii	43% id, 80% cov
SERB1_ARATH / Q96255: Phosphoserine aminotransferase 1, chloroplastic; AtPSAT1; Phosphohydroxythreonine aminotransferase; EC 2.6.1.52 from Arabidopsis thaliana PSAT / Q96255: phosphoserine aminotransferase (EC 2.6.1.52) from Arabidopsis thaliana Q96255: phosphoserine transaminase (EC 2.6.1.52) from Arabidopsis thaliana	49% id, 68% cov
SERC_YEAST / P33330: Phosphoserine aminotransferase; PSAT; Phosphohydroxythreonine aminotransferase; Serine requiring protein 1; EC 2.6.1.52 from Saccharomyces cerevisiae	40% id, 82% cov
More...

Pf1N1B4_3959: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) is similar to:	PaperBLAST
serC / P74281: serine—glyoxylate transaminase (EC 2.6.1.52) from Synechocystis sp. P74281: phosphoserine transaminase (EC 2.6.1.52) from Synechocystis sp.	30% id, 94% cov
serC / Q58369: phosphoserine aminotransferase monomer (EC 2.6.1.1; EC 2.6.1.52) from Methanocaldococcus jannaschii	26% id, 96% cov

Pf1N1B4_352: Phosphoserine aminotransferase (EC 2.6.1.52) is similar to:	PaperBLAST
SERC_ECOLI / P23721: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 from Escherichia coli SerC / b0907: phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli serC: phosphoserine aminotransferase; EC 2.6.1.52 from Escherichia coli serC / P23721: phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli P23721: phosphoserine transaminase (EC 2.6.1.52) from Escherichia coli	60% id, 17% cov
SERC_SPIOL / P52877: Phosphoserine aminotransferase, chloroplastic; PSAT; Phosphohydroxythreonine aminotransferase; EC 2.6.1.52 from Spinacia oleracea	65% id, 15% cov
SERB2_ARATH / Q9SHP0: Phosphoserine aminotransferase 2, chloroplastic; AtPSAT2; EC 2.6.1.52 from Arabidopsis thaliana Q9SHP0: phosphoserine transaminase (EC 2.6.1.52) from Arabidopsis thaliana	64% id, 16% cov
V9NC98: phosphoserine transaminase (EC 2.6.1.52) from Acanthamoeba castellanii	61% id, 16% cov
SERB1_ARATH / Q96255: Phosphoserine aminotransferase 1, chloroplastic; AtPSAT1; Phosphohydroxythreonine aminotransferase; EC 2.6.1.52 from Arabidopsis thaliana PSAT / Q96255: phosphoserine aminotransferase (EC 2.6.1.52) from Arabidopsis thaliana Q96255: phosphoserine transaminase (EC 2.6.1.52) from Arabidopsis thaliana	62% id, 15% cov
SERC_NIACI / Q59196: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 from Niallia circulans Q59196: phosphoserine transaminase (EC 2.6.1.52) from Niallia circulans	52% id, 18% cov
SERC_DROME / Q9VAN0: Probable phosphoserine aminotransferase; PSAT; Phosphohydroxythreonine aminotransferase; EC 2.6.1.52 from Drosophila melanogaster	56% id, 16% cov
SERC_HUMAN / Q9Y617: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 from Homo sapiens PSAT1 / Q9Y617: Phosphoserine aminotransferase (EC 2.6.1.52) from Homo sapiens Q9Y617: glycine transaminase (EC 2.6.1.4); phosphoserine transaminase (EC 2.6.1.52) from Homo sapiens	48% id, 18% cov
SERC_ALKAL / Q9RME2: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 from Alkalihalobacillus alcalophilus Q9RME2: phosphoserine transaminase (EC 2.6.1.52) from Alkalihalobacillus alcalophilus	49% id, 17% cov
PSAT1 / A2FXW5: phosphoserine transaminase (EC 2.6.1.52) from Trichomonas vaginalis	45% id, 17% cov
Q2F5M8: phosphoserine transaminase (EC 2.6.1.52) from Bombyx mori	37% id, 17% cov
SERC_YEAST / P33330: Phosphoserine aminotransferase; PSAT; Phosphohydroxythreonine aminotransferase; Serine requiring protein 1; EC 2.6.1.52 from Saccharomyces cerevisiae	39% id, 15% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

417221-417715 (frame -2) on unitig_2\|quiver.unitig_0\|quiver.unitig_1\|quiver\|pilon is similar to:	PaperBLAST
SERB2_ARATH / Q9SHP0: Phosphoserine aminotransferase 2, chloroplastic; AtPSAT2; EC 2.6.1.52 from Arabidopsis thaliana Q9SHP0: phosphoserine transaminase (EC 2.6.1.52) from Arabidopsis thaliana Also see hits to annotated proteins above	48% id, 25% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory