Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 26 curated entries in PaperBLAST's database that match '2.6.1.52' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_351: Phosphoserine aminotransferase (EC 2.6.1.52)
is similar to:
PaperBLAST

SERC_ECOLI / P23721: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 from Escherichia coli
SerC / b0907: phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli
serC: phosphoserine aminotransferase; EC 2.6.1.52 from Escherichia coli
serC / P23721: phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli

56% id,
81% cov

SERC_DROME / Q9VAN0: Probable phosphoserine aminotransferase; PSAT; Phosphohydroxythreonine aminotransferase; EC 2.6.1.52 from Drosophila melanogaster

51% id,
81% cov

SERC_HUMAN / Q9Y617: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 from Homo sapiens
PSAT1 / Q9Y617: Phosphoserine aminotransferase (EC 2.6.1.52) from Homo sapiens
Q9Y617: glycine transaminase (EC 2.6.1.4); phosphoserine transaminase (EC 2.6.1.52) from Homo sapiens

51% id,
80% cov

More...

Pf1N1B4_3959: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)
is similar to:
PaperBLAST

P74281: phosphoserine transaminase (EC 2.6.1.52) from Synechocystis sp.

30% id,
94% cov

serC / Q58369: phosphoserine aminotransferase monomer (EC 2.6.1.1; EC 2.6.1.52) from Methanocaldococcus jannaschii

26% id,
96% cov

Pf1N1B4_352: Phosphoserine aminotransferase (EC 2.6.1.52)
is similar to:
PaperBLAST

SERC_ECOLI / P23721: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 from Escherichia coli
SerC / b0907: phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli
serC: phosphoserine aminotransferase; EC 2.6.1.52 from Escherichia coli
serC / P23721: phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli

60% id,
17% cov

SERB2_ARATH / Q9SHP0: Phosphoserine aminotransferase 2, chloroplastic; AtPSAT2; EC 2.6.1.52 from Arabidopsis thaliana

64% id,
16% cov

V9NC98: phosphoserine transaminase (EC 2.6.1.52) from Acanthamoeba castellanii

61% id,
16% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

417221-417715 (frame -2) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

SERB2_ARATH / Q9SHP0: Phosphoserine aminotransferase 2, chloroplastic; AtPSAT2; EC 2.6.1.52 from Arabidopsis thaliana
Also see hits to annotated proteins above

48% id,
25% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory