Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 17 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_1873: Homoserine kinase (EC 2.7.1.39)
is similar to:
PaperBLAST

KHSE_PSEAE / P29364: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Pseudomonas aeruginosa

71% id,
100% cov

Ga0059261_3253: homoserine kinase (EC 2.7.1.39) from Sphingomonas koreensis

35% id,
96% cov

Pf1N1B4_1538: Shikimate kinase I (EC 2.7.1.71)
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

35% id,
77% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1774364-1774891 (frame -2) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris
Also see hits to annotated proteins above

35% id,
79% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory