Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.8' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_600: Glucokinase (EC 2.7.1.2)
is similar to:
PaperBLAST

Glk / b2388: glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) from Escherichia coli
glk / P0A6V8: glucokinase (EC 2.7.1.1; EC 2.7.1.8) from Escherichia coli

39% id,
98% cov

Pf1N1B4_4677: Trehalose synthase (EC 5.4.99.16)
is similar to:
PaperBLAST

GLCNK_STRJI / A0A1H7TQR5: Glucosamine kinase; GlcN kinase; GlcNK; EC 2.7.1.8 from Streptacidiphilus jiangxiensis
A0A1H7TQR5: glucosamine kinase (EC 2.7.1.8) from Streptacidiphilus jiangxiensis

27% id,
95% cov

GLCNK_MYCS2 / I7FJX8: Glucosamine kinase; GlcN kinase; GlcNK; EC 2.7.1.8 from Mycolicibacterium smegmatis
I7FJX8: glucosamine kinase (EC 2.7.1.8) from Mycolicibacterium smegmatis

30% id,
81% cov

Pf1N1B4_405: Carbohydrate kinase, PfkB family
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti

29% id,
88% cov

Pf1N1B4_1145: 1-phosphofructokinase (EC 2.7.1.56)
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti

25% id,
90% cov

Pf1N1B4_4844: Fructokinase (EC 2.7.1.4)
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti

27% id,
77% cov

Pf1N1B4_4765: 2-ketogluconate kinase (EC 2.7.1.13)
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti

33% id,
47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory