Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 61 curated entries in PaperBLAST's database that match '2.7.2.1'.

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_879: Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15) from Escherichia coli

67% id,
100% cov

Pf1N1B4_2800: Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA
is similar to:
PaperBLAST

PROB_ECOLI / P0A7B5: Glutamate 5-kinase; Gamma-glutamyl kinase; GK; EC 2.7.2.11 from Escherichia coli
ProB / b0242: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
proB: glutamate 5-kinase; EC 2.7.2.11 from Escherichia coli
proB / P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli

44% id,
99% cov

Q6E235: glutamate 5-kinase (EC 2.7.2.11) from Bacillus subtilis

40% id,
97% cov

G5K_LEIDO / A0A0R6Y3I5: Glutamate 5-kinase; LdG5K; Gamma-glutamyl kinase; EC 2.7.2.11 from Leishmania donovani

36% id,
98% cov

More...

Pf1N1B4_2688: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
is similar to:
PaperBLAST

P5CS1 / P54887: δ1-pyrroline-5-carboxylate synthetase (EC 1.2.1.41; EC 2.7.2.11) from Arabidopsis thaliana

37% id,
56% cov

P5CS1_ORYSJ / O04226: Delta-1-pyrroline-5-carboxylate synthase 1; OsP5CS1; EC 2.7.2.11; EC 1.2.1.41 from Oryza sativa

36% id,
56% cov

P5CS_HUMAN / P54886: Delta-1-pyrroline-5-carboxylate synthase; P5CS; Aldehyde dehydrogenase family 18 member A1; EC 2.7.2.11; EC 1.2.1.41 from Homo sapiens
ALDH18A1 / P54886: δ-1-pyrroline-5-carboxylate synthase (EC 1.2.1.41; EC 2.7.2.11) from Homo sapiens

37% id,
50% cov

More...

Pf1N1B4_941: D-alanine--D-alanine ligase (EC 6.3.2.4)
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15) from Escherichia coli

26% id,
53% cov

Pf1N1B4_3086: Uridine monophosphate kinase (EC 2.7.4.22)
is similar to:
PaperBLAST

Q6E235: glutamate 5-kinase (EC 2.7.2.11) from Bacillus subtilis

23% id,
54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory