Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 17 curated entries in PaperBLAST's database that match '3.1.1.25'.

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_413: L-arabinolactonase (EC 3.1.1.15)
is similar to:
PaperBLAST

AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens

85% id,
100% cov

Ac3H11_615: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Acidovorax sp.

34% id,
89% cov

SMc00883: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Sinorhizobium meliloti

30% id,
92% cov

Pf1N1B4_4510: Gluconolactonase (EC 3.1.1.17)
is similar to:
PaperBLAST

Ac3H11_615: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Acidovorax sp.

34% id,
92% cov

AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens

32% id,
98% cov

B2LYJ5: 1,4-lactonase (EC 3.1.1.25) from Fusarium proliferatum

31% id,
27% cov

Pf1N1B4_4402: SoxH protein, homolog
is similar to:
PaperBLAST

P0CJ63: 1,4-lactonase (EC 3.1.1.25) from Bacillus thuringiensis

36% id,
28% cov

Pf1N1B4_5674: Strictosidine synthase precursor (EC 4.3.3.2)
is similar to:
PaperBLAST

B2LYJ5: 1,4-lactonase (EC 3.1.1.25) from Fusarium proliferatum

34% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory