Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 257 curated entries in PaperBLAST's database that match '3.2.1.20'.

These curated entries have 183 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_835: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
is similar to:
PaperBLAST

AAF71997.1: α-glucosidase (EC 3.2.1.20)

58% id,
99% cov

CAA54266.1: α-glucosidase (EC 3.2.1.20)

49% id,
96% cov

AAA25570.1: α-glucosidase (Agl) (EC 3.2.1.20)

46% id,
99% cov

More...

Pf1N1B4_4677: Trehalose synthase (EC 5.4.99.16)
is similar to:
PaperBLAST

Q9Z3R8: alpha-glucosidase (EC 3.2.1.20) from Sinorhizobium meliloti

34% id,
99% cov

Psest_0870: Alpha-glucosidase (EC 3.2.1.20) from Pseudomonas stutzeri

33% id,
94% cov

Shewana3_2311: Alpha-glucosidase (EC 3.2.1.20) from Shewanella sp.

33% id,
92% cov

More...

Pf1N1B4_5805: Muconate cycloisomerase (EC 5.5.1.1)
is similar to:
PaperBLAST

Q2PCE2: alpha-glucosidase (EC 3.2.1.20) from Ferroplasma acidiphilum

22% id,
95% cov

Pf1N1B4_398: Galactonate dehydratase (EC 4.2.1.6)
is similar to:
PaperBLAST

Q2PCE2: alpha-glucosidase (EC 3.2.1.20) from Ferroplasma acidiphilum

25% id,
73% cov

Pf1N1B4_633: TolA protein
is similar to:
PaperBLAST

Q5NBP9: mannosyl-oligosaccharide alpha-1,3-glucosidase (EC 3.2.1.207) from Oryza sativa

23% id,
33% cov

Pf1N1B4_4686: Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141)
is similar to:
PaperBLAST

CAB46746.1: α-glucosidase (maltase mal22) (EC 3.2.1.20)

29% id,
22% cov

ABW98683.1: α-glucosidase / binding-toxin receptor (Agm3;AgAgm3) (EC 3.2.1.20)

29% id,
17% cov

Pf1N1B4_4684: Malto-oligosyltrehalose synthase (EC 5.4.99.15)
is similar to:
PaperBLAST

MalZ / b0403: maltodextrin glucosidase (EC 3.2.1.20) from Escherichia coli
malZ / P21517: maltodextrin glucosidase (EC 3.2.1.20) from Escherichia coli
P21517: alpha-glucosidase (EC 3.2.1.20) from Escherichia coli

33% id,
17% cov

AIZ92452.1: α-glucosidase Z (EO53_16270;MalZ;b0403) (EC 3.2.1.20)
BAE76183.1: maltodextrin glucosidase (MalZ) (EC 3.2.1.20)

33% id,
17% cov

Pf1N1B4_4735: Fap amyloid fibril major component
is similar to:
PaperBLAST

Q7PC53: exo-chitinase (non-reducing end) (EC 3.2.1.200) from Saccharophagus degradans

25% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4291869-4292426 (frame -1) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

Q7PC53: exo-chitinase (non-reducing end) (EC 3.2.1.200) from Saccharophagus degradans
Also see hits to annotated proteins above

28% id,
10% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory