Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 331 curated entries in PaperBLAST's database that match '3.2.1.23'.

These curated entries have 255 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_3419: Periplasmic beta-glucosidase (EC 3.2.1.21)
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

29% id,
80% cov

Pf1N1B4_3261: Periplasmic beta-glucosidase (EC 3.2.1.21)
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

29% id,
79% cov

Pf1N1B4_3195: hydrolase, putative
is similar to:
PaperBLAST

EFB02686.1: β-galactosidase (VadG925;Vvad_PD3900) (EC 3.2.1.23)

35% id,
23% cov

EFB02686.1: β-galactosidase (VadG925;Vvad_PD3900) (EC 3.2.1.23)

33% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory