Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 45 curated entries in PaperBLAST's database that match '3.2.1.80' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_5116: Sucrose-6-phosphate hydrolase (EC 3.2.1.B3)
is similar to:
PaperBLAST

INUE_ASPNC / A2R0E0: Extracellular exo-inulinase inuE; EC 3.2.1.80 from Aspergillus niger
ABB59682.1: exo-inulinase E (InuE;Inu1;An12g08280) (EC 2.4.1.99|3.2.1.80)

29% id,
92% cov

INUE_ASPFI / E1ABX2: Extracellular exo-inulinase inuE; EC 3.2.1.80 from Aspergillus ficuum
INUE_ASPNG / Q76HP6: Extracellular exo-inulinase inuE; EC 3.2.1.80 from Aspergillus niger
BAD01476.1: exo-inulinase (InuE) (EC 3.2.1.80)

29% id,
92% cov

INUE_ASPAW / Q96TU3: Extracellular exo-inulinase inuE; EC 3.2.1.80 from Aspergillus awamori
CAC44220.1: exo-inulinase (Inu1) (EC 3.2.1.80)
Q96TU3: fructan beta-fructosidase (EC 3.2.1.80) from Aspergillus awamori

28% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5675832-5677379 (frame +3) on unitig_2|quiver.unitig_0|quiver.unitig_1|quiver|pilon
is similar to:
PaperBLAST

INUE_ASPAW / Q96TU3: Extracellular exo-inulinase inuE; EC 3.2.1.80 from Aspergillus awamori
CAC44220.1: exo-inulinase (Inu1) (EC 3.2.1.80)
Q96TU3: fructan beta-fructosidase (EC 3.2.1.80) from Aspergillus awamori
Also see hits to annotated proteins above

28% id,
100% cov

AAO76866.1: β-fructofuranosidase (BT1759) (EC 3.2.1.26|3.2.1.64|3.2.1.80)
Also see hits to annotated proteins above

32% id,
80% cov

SACC_BACSU / P05656: Levanase; Beta-D-fructofuranosidase; Exo-beta-D-fructosidase; Exo-levanase; EC 3.2.1.80 from Bacillus subtilis
sacC / GB|CAA63465.1: fructan beta-fructosidase; EC 3.2.1.80 from Bacillus subtilis
P05656: fructan beta-fructosidase (EC 3.2.1.80) from Bacillus subtilis
Also see hits to annotated proteins above

32% id,
76% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory