Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 17 curated entries in PaperBLAST's database that match '3.2.1.93'.

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_835: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
is similar to:		 PaperBLAST

AO353_15985: Alpha,alpha-phosphotrehalase (EC 3.2.1.93) from Pseudomonas fluorescens

 89% id,
100% cov

AAG31032.1: trehalose-6-phosphate hydrolase (TreA) (EC 3.2.1.93)

 87% id,
100% cov

PS417_23045: Alpha,alpha-phosphotrehalase (EC 3.2.1.93) from Pseudomonas simiae

 87% id,
100% cov

More...

Pf1N1B4_4677: Trehalose synthase (EC 5.4.99.16)
is similar to:		 PaperBLAST

TREC_ECOLI / P28904: Trehalose-6-phosphate hydrolase; Alpha,alpha-phosphotrehalase; EC 3.2.1.93 from Escherichia coli
TreE / b4239: trehalose-6-phosphate hydrolase (EC 3.2.1.93) from Escherichia coli
AAC77196.1: trehalose-6-phosphate hydrolase (TreC) (EC 3.2.1.93)
treC / P28904: trehalose-6-phosphate hydrolase (EC 3.2.1.93) from Escherichia coli

 33% id,
92% cov

BAB38639.1: trehalose 6-P hydrolase (ECs5216) (EC 3.2.1.93)

 32% id,
92% cov

AAU39732.1: trehalose-6-P hydrolase (TreA;BlTreA;BLi00797;BL03069) (EC 3.2.1.93)
Q65MI2: alpha,alpha-phosphotrehalase (EC 3.2.1.93) from Bacillus licheniformis

 37% id,
58% cov

More...

Pf1N1B4_4684: Malto-oligosyltrehalose synthase (EC 5.4.99.15)
is similar to:		 PaperBLAST

ABF38825.1: MGAS10750_Spy1875 (DexS) (EC 3.2.1.93)

 33% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory