Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 17 curated entries in PaperBLAST's database that match '3.5.3.12'.

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_1661: Agmatine deiminase (EC 3.5.3.12)
is similar to:
PaperBLAST

AO356_10030: Agmatine deiminase (EC 3.5.3.12) from Pseudomonas fluorescens

92% id,
99% cov

AGUA_PSEAE / Q9I6J9: Agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Pseudomonas aeruginosa
Q9I6J9: agmatine deiminase (EC 3.5.3.12) from Pseudomonas aeruginosa

79% id,
100% cov

AGUA_MEDTR / G7JT50: Agmatine deiminase; Agmatine iminohydrolase; MtAIH; EC 3.5.3.12 from Medicago truncatula

56% id,
100% cov

More...

Pf1N1B4_4326: N-carbamoylputrescine amidase (3.5.1.53)
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

49% id,
98% cov

Pf1N1B4_1662: N-carbamoylputrescine amidase (3.5.1.53) / Aliphatic amidase AmiE (EC 3.5.1.4)
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

47% id,
99% cov

Pf1N1B4_4328: Agmatine deiminase (EC 3.5.3.12)
is similar to:
PaperBLAST

O86509: agmatine deiminase (EC 3.5.3.12) from Streptomyces coelicolor

40% id,
100% cov

AGUA_PSEAE / Q9I6J9: Agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Pseudomonas aeruginosa
Q9I6J9: agmatine deiminase (EC 3.5.3.12) from Pseudomonas aeruginosa

35% id,
95% cov

AO356_10030: Agmatine deiminase (EC 3.5.3.12) from Pseudomonas fluorescens

34% id,
99% cov

More...

Pf1N1B4_4325: Agmatine deiminase (EC 3.5.3.12)
is similar to:
PaperBLAST

AGUA_PSEAE / Q9I6J9: Agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Pseudomonas aeruginosa
Q9I6J9: agmatine deiminase (EC 3.5.3.12) from Pseudomonas aeruginosa

41% id,
97% cov

AGUA_MEDTR / G7JT50: Agmatine deiminase; Agmatine iminohydrolase; MtAIH; EC 3.5.3.12 from Medicago truncatula

40% id,
97% cov

O86509: agmatine deiminase (EC 3.5.3.12) from Streptomyces coelicolor

39% id,
98% cov

More...

Pf1N1B4_2504: 5-aminopentanamidase (EC 3.5.1.30)
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

29% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory