Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 12 curated entries in PaperBLAST's database that match '3.7.1.22'.

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_4279: Epi-inositol hydrolase (EC 3.7.1.-)
is similar to:
PaperBLAST

Pf1N1B4_4279: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Pseudomonas fluorescens

100% id,
100% cov

AO353_21360: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Pseudomonas fluorescens

95% id,
100% cov

AO356_23185: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Pseudomonas fluorescens

91% id,
100% cov

More...

Pf1N1B4_2878: Acetolactate synthase large subunit (EC 2.2.1.6)
is similar to:
PaperBLAST

PS417_11870: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Pseudomonas simiae

25% id,
92% cov

PGA1_c07250: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Phaeobacter inhibens

26% id,
87% cov

HSERO_RS12130: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Herbaspirillum seropedicae

25% id,
88% cov

More...

Pf1N1B4_3661: Glyoxylate carboligase (EC 4.1.1.47)
is similar to:
PaperBLAST

SMc01166: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Sinorhizobium meliloti

25% id,
82% cov

Q9L3I0: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (ring-opening) (EC 3.7.1.22) from Rhizobium leguminosarum

25% id,
80% cov

PGA1_c07250: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Phaeobacter inhibens

25% id,
76% cov

More...

Pf1N1B4_5609: Sulfopyruvate decarboxylase - beta subunit (EC 4.1.1.79)
is similar to:
PaperBLAST

HSERO_RS12130: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Herbaspirillum seropedicae

41% id,
10% cov

Q9L3I0: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (ring-opening) (EC 3.7.1.22) from Rhizobium leguminosarum

41% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory