Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens FW300-N1B4 (pseudo1_N1B4)

Found 2 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens FW300-N1B4, or try another query

Pf1N1B4_2275: Fumarylacetoacetate hydrolase family protein
is similar to:

lra6 / Q1NEI7: L-2,4-diketo-3-deoxyrhamnonate hydrolase (EC from Sphingomonas sp.

33% id,
72% cov

HSERO_RS06355: 2,4-diketo-3-deoxy-L-fuconate hydrolase (EC from Herbaspirillum seropedicae

35% id,
67% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory